Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella loihica PV-4

 Score = 2217 bits (5745), Expect = 0.0
 Identities = 1115/1404 (79%), Positives = 1239/1404 (88%), Gaps = 5/1404 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLK Q KTEEF+ IKIGLASPD+IRSWSFGEVKKPETINYRTFKPER+GLFCAR
Sbjct: 1    MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHI+LASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIERVLYFE +VV EPGMT LERGQMLTEE YLD LEE+GDEF AKM
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+ +LL ++DL  E E+MREEL + NSET+RKK+TKRLKL+EAF  SGNKPEWMIL 
Sbjct: 181  GAEAVLELLRAIDLEKEIEEMREELPSINSETRRKKITKRLKLIEAFYQSGNKPEWMILK 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVERE   VWD+LD+VIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVPEVWDVLDDVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R+LMMSTNNILSPA+G+P+I PSQDVVLGLYY +RE+IN +GEGM     AE EKAYRT 
Sbjct: 481  RSLMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFESVAEVEKAYRTG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             AELHARVKVRITET   E+G+ T   +++DTTVGRA+L Q++PKGL Y LVNQ +GKKQ
Sbjct: 541  VAELHARVKVRITETTIAEDGERTESRRIVDTTVGRALLSQVLPKGLSYDLVNQNMGKKQ 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS LLN  YR+LGLKDTVIFADQ+MYTGF +A +SG SVGI+DMV+P  KY+ +A+AE E
Sbjct: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFHFATVSGASVGINDMVIPDEKYSLVADAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWAS N++V+KAMM+NLS+E VINR GE+E Q SFN
Sbjct: 661  VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMDNLSTETVINRDGEEETQASFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VV E DCGT EG+ M P IEGGDV   L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRVV+ED+  PGT++VL PRNTLLDE WC  + ++S+D++KVRSV++CD+DFG CA CYG
Sbjct: 841  GRVVAEDVYYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVKVRSVISCDTDFGVCAACYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGHL+NQGEA+GV+AAQSIGEPGTQLTMRTFHIGGAAS A+AEN++Q KN G+VKL
Sbjct: 901  RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGTVKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
            HNAK VTN DGKLVI SR+SE+ IIDE GR KE++K+PYG++L K +   V AGE +AN 
Sbjct: 961  HNAKHVTNSDGKLVIVSRSSEIAIIDELGREKERYKVPYGTVLEKLEDATVNAGEVIANR 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HT PI++EVAG ++FVDMI+GVT++RQTD+LTGLSS  V +   RP AGK+MRPAI+L
Sbjct: 1021 DPHTHPIVSEVAGSIKFVDMIEGVTMTRQTDELTGLSSIVVMDVGQRPTAGKEMRPAIRL 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            V A+G D++IPGT++PAQYFLPGKAIVN DD A++ VGD LARIPQ+S   +DITGGLPR
Sbjct: 1081 VGADGNDLMIPGTEVPAQYFLPGKAIVNQDDNAQIAVGDALARIPQESSKTRDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLNVFE 1199
            VADLFEARKPKEPAILAE+SGT+SFGKETKGKRRL+IT  D G  YEEMIPK R LNVFE
Sbjct: 1141 VADLFEARKPKEPAILAEYSGTISFGKETKGKRRLVITPADGGKPYEEMIPKWRNLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GE++ERG+VIADGPE+ HDILRLRGIH V  YI NEVQ+VYRLQGVKINDKHIE I+RQM
Sbjct: 1201 GEKVERGEVIADGPEAAHDILRLRGIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRKC IT AGDSEFLPGE VE S+VKIANR+L  +GKEPA+FERELLGITKASLATESFI
Sbjct: 1261 LRKCEITEAGDSEFLPGEQVEVSRVKIANRELEAQGKEPAKFERELLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDR----QAKRAQE 1375
            SAASFQETTRVLTEAAV GK D LRGLKENVIVGRLIPAGTG+AYH  R    Q   A+E
Sbjct: 1321 SAASFQETTRVLTEAAVGGKSDKLRGLKENVIVGRLIPAGTGYAYHTSRNQAAQNGPAEE 1380

Query: 1376 QQGPSAEQATDNLAALLNAGFSSD 1399
                SA +A  NLA LLN   S +
Sbjct: 1381 VPAISASEAEQNLADLLNLAGSPE 1404