Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 1839 bits (4764), Expect = 0.0
 Identities = 917/1380 (66%), Positives = 1120/1380 (81%), Gaps = 2/1380 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MK LL+  K   + EEFDAI I LASPD IRSWS+GEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKALLDLFKQVTQEEEFDAITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRR+RMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSR+G+++DM LRDIERVLYFE YVV EPGMT L RGQ+LTE++YL ++EE+GD+F A M
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDDFIALM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+++LL ++DL  E E++R EL+TT SE K KK+ KRLK++E F  SG KP+WMIL 
Sbjct: 181  GAEAVRELLRTLDLDHEVERLRSELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMILE 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVD+LLDNGRRG+A+TG+NKRPLKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPK MALELFKPFI+ KLE  GLATTIK AKKMVE +E VVWDIL++VIREHP
Sbjct: 361  LKLHQCGLPKLMALELFKPFIFHKLELMGLATTIKQAKKMVESQEPVVWDILEDVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+EA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            RTLM+++NN+LSPA+G+PIIVPSQD+VLGLYY TR++INAKGEGM     +E  +A  + 
Sbjct: 481  RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATRDRINAKGEGMNFADVSEVLRAVNSG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             A+LHA+V VR+ E ++ E+G+   +    +TT GRA+L +I+PKGLP+S++++ L KK+
Sbjct: 541  LADLHAKVSVRLKEYVRGESGEWVEKITRYNTTCGRAILSEILPKGLPFSVIDKALKKKE 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS L+N ++R+ GLK+TV+FAD++M  G+A A  +G+S   DDM VP  K+T IAEAE+E
Sbjct: 601  ISKLINTSFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMRVPTEKHTIIAEAEKE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V+EI+ Q+ +GLVT GERYNKV+DIW  T D+VAK MME L  E+V++R G+  KQESFN
Sbjct: 661  VKEIETQYTNGLVTFGERYNKVVDIWGRTGDQVAKVMMEQLGHEEVVDRHGKTVKQESFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPIT NF+EGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDV QD+VVTE DCGT  GV M   IEGG+V   L +  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLRDRIL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRVV  D++ P ++E +I   TL+DE  C +I+   +D++KVR+ +TCD+ +G CA+CYG
Sbjct: 841  GRVVVADVVNPESEETVIEAGTLVDEDLCDLIDKLGIDEVKVRTPLTCDTRYGLCAKCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDL RG LVN GEAVGVIAAQSIGEPGTQLTMRTFH+GGAAS AA  + +  K+NG V+ 
Sbjct: 901  RDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADRVDTKSNGVVRF 960

Query: 961  -HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVAN 1019
                ++VTN  G+ ++ +R+ E+ + D+ GR +E+HK+PYG++L+  DG  V AG  +A 
Sbjct: 961  TATMRYVTNVKGEKIVFTRSGEVLVTDDNGRERERHKVPYGAILTADDGQVVKAGAVLAT 1020

Query: 1020 WEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTE-AAARPAAGKDMRPAI 1078
            W+ HT P+ITE AG ++F ++ +G TV++Q DD+TGLS+  V +      A  K +RP +
Sbjct: 1021 WDPHTRPMITEYAGTIKFENVEEGSTVAKQIDDVTGLSTLVVIDPKRGGKAQAKGLRPQV 1080

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
            KL+D NG++V + GT+          +I+ + DG +V VGD LA+IPQ+S   +DITGGL
Sbjct: 1081 KLLDENGQEVKMHGTEHAVTITFQVGSIITVADGQQVGVGDVLAKIPQESAKTRDITGGL 1140

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVF 1198
            PRVA+LFEAR PK+  +LAE++GTVSFGK+TKGK+RL+IT   G  +E +I K + + V 
Sbjct: 1141 PRVAELFEARTPKDVGMLAEYTGTVSFGKDTKGKQRLVITDLDGVAHEYLILKDKHVMVH 1200

Query: 1199 EGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQ 1258
            +G+ + +G+VI DG   PH+IL+L+G+ A+  YI +EVQ+VYRLQGVKINDKHIE IVRQ
Sbjct: 1201 DGQVVNKGEVIVDGEPDPHEILKLKGVEALARYITDEVQDVYRLQGVKINDKHIEVIVRQ 1260

Query: 1259 MLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESF 1318
            MLR+ TIT  GD+ F+  E VE + V   N ++V EGK PA ++  LLGITKASL+T+SF
Sbjct: 1261 MLRRVTITEPGDTRFIKSEQVERADVLDENDRVVAEGKLPASYDYMLLGITKASLSTDSF 1320

Query: 1319 ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQG 1378
            ISAASFQETTRVLTEAA+ GKRD+LRGLKENVIVGRLIPAGTG AYH  R+ + A   QG
Sbjct: 1321 ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNSRRQQAAGNDQG 1380