Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., DNA-directed RNA polymerase subunit A'' from Methanococcus maripaludis JJ

 Score = 58.2 bits (139), Expect = 1e-12
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAA 941
           LV  GEAVGV+AAQSIGEPGTQ+TMRTFH  G A
Sbjct: 53  LVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVA 86



 Score = 41.6 bits (96), Expect = 1e-07
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
            S ++ A+F+ET + L  A++ G  D+L G+ EN+IVG+ I  GTG
Sbjct: 326  SVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTG 370



 Score = 25.8 bits (55), Expect = 0.008
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 1133 DITGGLPRVADLFEARK-PKEPAILAEHSGTVSFGKETKGKRRLIIT 1178
            ++T GLPR+ ++ +ARK P  P +      T+    E KG R    T
Sbjct: 89   NVTLGLPRMIEIVDARKEPSTPTM------TIYLNDEFKGDREKAAT 129