Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta from Marinobacter adhaerens HP15

 Score = 1982 bits (5134), Expect = 0.0
 Identities = 1004/1402 (71%), Positives = 1159/1402 (82%), Gaps = 10/1402 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLLN LK+Q++++EFDAI+IGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLNLLKSQNQSKEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEV    VRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVALASVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIERVLYFE ++V +PGMT LE+GQ+L +E+Y + LEE+GDEF A+M
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLNDEQYYEALEEFGDEFDARM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+K+LL  +DL  E + +REE+  TNSETK KK +KRLK++EAF+ SGNKP  M++T
Sbjct: 181  GAEAVKELLEGIDLQEEVDALREEIPQTNSETKIKKFSKRLKILEAFLYSGNKPGDMVMT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDALLDNGRRGRAITG+NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI VGPY
Sbjct: 301  EAVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+SKLE RGLATTIKAAKKMVEREE VVWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEGVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            ++LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNN+LSPA+G+PIIVPSQDVVLGLYYMTRE+ +A GEGM      EA +AY   
Sbjct: 481  RALMMSTNNVLSPANGEPIIVPSQDVVLGLYYMTRERKSALGEGMVFADVKEAHRAYGAG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
              +L A VKVR+ E    E+G  T + K++DTTVGRA+L+ IVP GL Y LVN+ + KK 
Sbjct: 541  KVDLQAIVKVRVKEVAIAEDGSRTEQYKIVDTTVGRALLFDIVPDGLSYELVNKPMVKKA 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            ISNL+N  YR  GLKDTVIFADQ+MY G+ YA +SG+S+G +D  +P  KY  +  A  E
Sbjct: 601  ISNLINTCYRDAGLKDTVIFADQLMYMGYHYATVSGISIGFNDFEIPPEKYELVDAASAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEK----- 715
            V++I+ Q+ SGL+T GE+YNKVIDIW+  ND+V+KAMME L+ EQVI   G+  K     
Sbjct: 661  VKDIETQYASGLLTQGEKYNKVIDIWSRANDKVSKAMMERLAKEQVIGPDGQPVKGEDGE 720

Query: 716  ---QESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQY 772
               QESFNS+YMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQY
Sbjct: 721  YLMQESFNSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQY 780

Query: 773  FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVK 832
            FISTHGARKGLADTALKTANSGYLTRRLVDV+QD+VVTE DCGT EG++MTPHIEGGDV 
Sbjct: 781  FISTHGARKGLADTALKTANSGYLTRRLVDVSQDLVVTEPDCGTDEGLLMTPHIEGGDVV 840

Query: 833  VALTELALGRVVSEDILKP-GTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSD 891
            V L +  LGRV + D   P   D  +I   TLLDEK  + +    VD++ VRS +TC++ 
Sbjct: 841  VPLGDRVLGRVTARDAFTPTDKDNAVIEAGTLLDEKAVETLERAGVDEVWVRSAITCETR 900

Query: 892  FGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQ 951
             G C++CYGRDLARGH VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS A+A ++IQ
Sbjct: 901  HGICSKCYGRDLARGHEVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQ 960

Query: 952  AKNNGSVKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAV 1011
             K+ G+V+LHN K +   DG LV+ SR+S L I D+ GR +E +KLPYG++LS   GDAV
Sbjct: 961  VKHGGTVRLHNMKSIEKADGTLVVISRSSALAIADDQGREREWYKLPYGAVLSVKHGDAV 1020

Query: 1012 AAGETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAG 1071
             AG  VA W+ HT PII E  G  +FV+M  G+TV  QTD+LTGLS+ EV ++  RPAAG
Sbjct: 1021 EAGVVVAKWDPHTHPIIAEAGGTAKFVNMDQGITVRTQTDELTGLSTMEVIDSKERPAAG 1080

Query: 1072 KDMRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGN 1131
            KD+RPAI+L+D  G++V +PG    A +FLP  A+V + +GA + +GD +ARIPQ+S   
Sbjct: 1081 KDIRPAIQLIDEKGEEVELPGGG-TAIFFLPANALVTMANGARIELGDVVARIPQESSKT 1139

Query: 1132 KDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPK 1191
            +DITGGLPRVADLFEAR+PKE +ILAE SG VSFGKETKGK+RL+IT   GD YE +IPK
Sbjct: 1140 RDITGGLPRVADLFEARRPKESSILAEISGMVSFGKETKGKKRLVITPKDGDAYEVLIPK 1199

Query: 1192 HRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKH 1251
            HRQLNVFEGE +E+G+VI+DGP +PHDILRL G+  +  YI NE+Q+VYRLQGV INDKH
Sbjct: 1200 HRQLNVFEGETVEKGEVISDGPSNPHDILRLLGVVELAKYITNEIQDVYRLQGVVINDKH 1259

Query: 1252 IETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKA 1311
            IE IVRQMLRK  IT  GD+  L G+ VE +QV   N K     KEPARFER LLGITKA
Sbjct: 1260 IEVIVRQMLRKVEITDPGDTTLLSGDQVEITQVLEENEKADAADKEPARFERLLLGITKA 1319

Query: 1312 SLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAK 1371
            SLATESFISAASFQETTRVLTE AV+GKRD LRGLKENV+VGRLIPAGTG AYH +R+ K
Sbjct: 1320 SLATESFISAASFQETTRVLTEGAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHNERRRK 1379

Query: 1372 RAQEQQGPSAEQATDNLAALLN 1393
            R  E+QG +A    + L+A LN
Sbjct: 1380 RDLEEQGVTAADVEEALSAELN 1401