Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Enterobacter sp. TBS_079

 Score = 2281 bits (5911), Expect = 0.0
 Identities = 1152/1405 (81%), Positives = 1255/1405 (89%), Gaps = 5/1405 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLKAQ KTEEFDAIKI LASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
Sbjct: 1    MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGLL+DMPLRDIERVLYFE YVV E GMT+LER Q+LTEE+YLD LEE+GDEF AKM
Sbjct: 121  PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERHQILTEEQYLDALEEFGDEFDAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI+ LL SMDL  E EQ+REEL+ TNSETKRKKLTKR+KL+EAFV SGNKPEWMILT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVEREEAVVWDILDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYMTR+ +NAKGEGM LTGP EAE+ YR  
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             A LHARVKVRITE  K  NG+   +T + DTTVGRA+LW IVPKGLP+S+VNQ LGKK 
Sbjct: 541  LASLHARVKVRITEYEKDANGEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS +LN  YR LGLK TVIFADQ MYTGFAYAA SG SVGIDDMV+P  K+  I+EAE E
Sbjct: 601  ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWA+ NDRV+KAMM+NL +E VINR G +E+Q SFN
Sbjct: 661  VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVTE DCGTLEG+ MTP IEGGDVK  L +  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRV +EDILKPGT ++L+PRNTLL E+WC ++  NSVD +KVRSVV+CD+DFG CA CYG
Sbjct: 841  GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH++N+GEA+GVIAAQSIGEPGTQLTMRTFHIGGAAS AAAE+SIQ KN GS+KL
Sbjct: 901  RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
             NAK V N  GKLV+TSR +EL +IDEFGRTKE +K+PYG++++K DG+ VA GETVANW
Sbjct: 961  SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HTMP+ITEV+G ++F DMIDG T++RQTD+LTGLSS  V ++A R A GKD+RPA+K+
Sbjct: 1021 DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            VDA G DVLIPGTDMPAQYFLPGKAIV L+DG +++ GDTLARIPQ+SGG KDITGGLPR
Sbjct: 1081 VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITR-DSGDTYEEMIPKHRQLNVFE 1199
            VADLFEAR+PKEPAILAE SG +SFGKETKGKRRL+IT  D  + YEEMIPK RQLNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GER+ERGDV++DGPE+PHDILRLRG+HAVT YI NEVQ+VYRLQGVKINDKHIE IVRQM
Sbjct: 1201 GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRK TI  AG SEFL GE VEYS+VKIANR L   GK  A F R+LLGITKASLATESFI
Sbjct: 1261 LRKATIDSAGSSEFLEGEQVEYSRVKIANRDLEANGKIAATFSRDLLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ--- 1376
            SAASFQETTRVLTEAAV+GKRD+LRGLKENVIVGRLIPAGTG+AYHQDR  +RA  +   
Sbjct: 1321 SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA 1380

Query: 1377 -QGPSAEQATDNLAALLNAGFSSDD 1400
                +AE A+ +LA LLNAG    D
Sbjct: 1381 APQVTAEDASASLAELLNAGLGGSD 1405