Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 1615 bits (4182), Expect = 0.0
 Identities = 796/1363 (58%), Positives = 1039/1363 (76%), Gaps = 20/1363 (1%)

Query: 19   AIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRL 78
            AI+I +ASP+ IR WS+GEVKKPETINYRTFKPERDGLFCA+IFGPVKDYEC CGKYKR+
Sbjct: 24   AIQITIASPENIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRM 83

Query: 79   KHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIERV 138
            KHRG++CEKCGVEV  +KVRR+RMGHIELA+PVAHIWFLK+LPS+IG L+DM + D+E+V
Sbjct: 84   KHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKV 143

Query: 139  LYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKMGAEAIKDLLASMDLPAE 197
            LYF+ Y+V +PG T+L + Q+++E++YL  ++ +G D  T  MGAEA++ LL  ++L   
Sbjct: 144  LYFDSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDALTVGMGAEAVRSLLEELNLEEL 203

Query: 198  AEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPLDG 257
              Q+REE   T S+TK+KKLTKRLK+VEAF+ S NKPEWM++ V+PV+PP+LRPLVPLDG
Sbjct: 204  RVQLREESQATKSQTKKKKLTKRLKIVEAFLESNNKPEWMVMEVIPVIPPELRPLVPLDG 263

Query: 258  GRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRAIT 317
            GRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQE+VDAL DNGRRGRAIT
Sbjct: 264  GRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAIT 323

Query: 318  GSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELF 377
            G+N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELF
Sbjct: 324  GTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELF 383

Query: 378  KPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAF 437
            KPFIYS+LE RGLA+TIK+AKKMVEREE VVWDIL+EV+RE+P++LNRAPTLHRLGIQ+F
Sbjct: 384  KPFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPIMLNRAPTLHRLGIQSF 443

Query: 438  EPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGD 497
            EP+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPA+G 
Sbjct: 444  EPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGS 503

Query: 498  PIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITETIK 557
            P+IVPSQD+VLGLYYMT ++   KGE M    P E   AY      LHAR+ VR+     
Sbjct: 504  PVIVPSQDIVLGLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRM----- 558

Query: 558  HENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQISNLLNEAYRKLGLKDT 617
             E+G      K++ TTVGR ++W+++P  +P+S+VN  L KK I+ L++ AYR  G K T
Sbjct: 559  -EDG------KVVRTTVGRILVWELLPHCVPFSMVNTTLTKKNIARLVSTAYRDAGTKAT 611

Query: 618  VIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLVTAGE 677
            VI  D++   G+ YA  +GV++ + D+ +P+ K   I  A+ EV +I+ Q++ G++T  E
Sbjct: 612  VILCDRLKDVGYEYATRAGVTIAVKDLTIPSTKKGLIETAQNEVDDIERQYRDGIITRTE 671

Query: 678  RYNKVIDIWASTNDRVAKAMMENLSSEQVIN-RQGEQEKQESFNSIYMMADSGARGSAAQ 736
            +YNKV+D+W      V+  M+  +SS+ V + R G +E   SFNSIYMM+ SGARG+  Q
Sbjct: 672  KYNKVVDVWTKATQDVSNEMIREISSDIVEDPRTGAKEANSSFNSIYMMSTSGARGNQDQ 731

Query: 737  IRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYL 796
            +RQLAGMRGLMA+P G IIETPIT++F+EGL+VLQYF STHGARKGLADTALKTANSGYL
Sbjct: 732  MRQLAGMRGLMAKPSGEIIETPITSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYL 791

Query: 797  TRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGTDEV 856
            TRRLVDV QDV+V+EHDCGT++G+ +T   EGG++K+ L + ALGRV+   +  P T ++
Sbjct: 792  TRRLVDVVQDVIVSEHDCGTVDGIELTHIKEGGEIKIPLADRALGRVLLYPVYDPETRDL 851

Query: 857  LIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGEAVG 916
            L P NTL+DE   KV+ +  V  + +RS +TC SD G C  CYGRDLARGH+VN GE VG
Sbjct: 852  LFPENTLVDENVAKVLVEREVSSVMIRSALTCQSDRGICTLCYGRDLARGHIVNIGETVG 911

Query: 917  VIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGKLVIT 976
            +IAAQSIGEPGTQLTMRTFHIGG AS     +S +A++ G V L   K V N+DG+ ++ 
Sbjct: 912  IIAAQSIGEPGTQLTMRTFHIGGTASREIERSSFEAQHPGRVILSRVKAVRNRDGQYMVM 971

Query: 977  SRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAGRVQ 1036
             ++ +L I+D+ GR +EK+ LP GS L   +G+ +  G+ +A W+    P ++EV G ++
Sbjct: 972  GKSGQLAIVDDQGREREKYTLPNGSRLLVTEGEEIRKGQILAEWDPFNEPFVSEVDGVIR 1031

Query: 1037 FVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGTDMP 1096
            F D+++G T   + D+ T +++  + E         + RP+I + D +G +V + G ++P
Sbjct: 1032 FSDIVEGKTFQEKMDEATRMTTQTIIEYRT-----TNFRPSISICDEHG-EVKMRGNNIP 1085

Query: 1097 AQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAIL 1156
            A Y LP  AI+ + +G ++  GD +AR P+++   KDI GGLPRVA+LFE RKPK+ A++
Sbjct: 1086 ATYSLPVGAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVV 1145

Query: 1157 AEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESP 1216
            +E +G V++  ETKGKR+L++T + G+  E ++PK + + V +G+ +E GD++ +G    
Sbjct: 1146 SEIAGIVTYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPEL 1205

Query: 1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPG 1276
            HDILR RG   +  Y+ +E+QEVYR QGV I+DKHIE IVRQML+K T+   G + FL G
Sbjct: 1206 HDILRTRGEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPGGTTFLVG 1265

Query: 1277 ETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAV 1336
            E V+  + ++ N + + EG+ PA  E  +LGIT+ASL T SFISAASFQETT+VLTEA++
Sbjct: 1266 EQVDKGEFRVENTRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASL 1325

Query: 1337 SGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGP 1379
             GK D LRGLKENVIVGRLIPAGTG+  + +      ++++ P
Sbjct: 1326 RGKMDYLRGLKENVIVGRLIPAGTGYREYVNTDILVPEQRERP 1368