Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1415 a.a., DNA-directed RNA polymerase, beta' subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 1628 bits (4216), Expect = 0.0
 Identities = 823/1388 (59%), Positives = 1042/1388 (75%), Gaps = 14/1388 (1%)

Query: 17   FDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76
            FD IK+ LASP+ I SWSFGE+KKPETINYRTFKPERDGLFCARIFGP+KDYECLCGKYK
Sbjct: 19   FDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYK 78

Query: 77   RLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIE 136
            R+K+RGVICEKCGVEVT  KVRR+RMGHIELA+PVAHIWFLKSLPSRIG ++DM LRD+E
Sbjct: 79   RMKYRGVICEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGTMLDMTLRDLE 138

Query: 137  RVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKMGAEAIKDLLASMDLP 195
            R+LYFE YVV EPG+TDL  GQ++TEEE+LD  + +G D FTA +GAEAI+++LA++DL 
Sbjct: 139  RILYFENYVVIEPGLTDLTYGQLMTEEEFLDAQDAYGMDAFTANIGAEAIREMLAAIDLE 198

Query: 196  AEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPL 255
             EAEQ+R +L     E K KK+ KRLKLVE F+ SGN+PEWM+LTV+PV+PP+LRPLVPL
Sbjct: 199  TEAEQLRADLAEATGELKPKKIIKRLKLVENFLESGNRPEWMVLTVVPVIPPELRPLVPL 258

Query: 256  DGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRA 315
            DGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQESVDAL DNGRRGR 
Sbjct: 259  DGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDNGRRGRV 318

Query: 316  ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375
            ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVD+SGRSVI  GP L+LHQCGLPKKMALE
Sbjct: 319  ITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALE 378

Query: 376  LFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435
            LFKPFIYS+LE +GL++T+K AKK+VE+E   VWDILDEVIREHPV+LNRAPTLHRLGIQ
Sbjct: 379  LFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTLHRLGIQ 438

Query: 436  AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPAS 495
            AFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEAR LMMSTNN+LSPA+
Sbjct: 439  AFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPAN 498

Query: 496  GDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITET 555
            G PIIVPSQD++LGLYY+T E+    G+GM    P E E A    T  LH++++ R+ + 
Sbjct: 499  GAPIIVPSQDMILGLYYITLEREGLPGQGMIFGSPEEVEHALTAGTVHLHSKIQARVKQ- 557

Query: 556  IKHENGKLTTETKMIDTTVGRAMLWQIVPKG--LPYSLVNQKLGKKQISNLLNEAYRKLG 613
            I  E  ++    K  +TT GR  L  ++P     P+ LVN+ L KK++  +++  YR  G
Sbjct: 558  IDDEGNEI---YKRYETTPGRVRLGALLPLNAKAPFELVNRLLRKKEVQQVIDTVYRYCG 614

Query: 614  LKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLV 673
             K++VIF DQIM  GF  A  +G+S G DDM++P  K+  +    ++V+E ++Q+  GL+
Sbjct: 615  QKESVIFCDQIMTLGFREAFKAGISFGKDDMLIPDTKWDIVEGVRDQVKEFEQQYMDGLI 674

Query: 674  TAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGS 733
            T GE+YNKV+D W+  +D VA  MM+ +S ++      + ++Q   NS+YMMA SGARGS
Sbjct: 675  TQGEKYNKVVDAWSKCSDEVASEMMDEISRDRF---DPDTKEQMEPNSVYMMAHSGARGS 731

Query: 734  AAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANS 793
             AQ++QL GMRGLMA+P G IIETPI +NFKEGL VL+YF STHGARKGLADTALKTANS
Sbjct: 732  PAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANS 791

Query: 794  GYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGT 853
            GYLTRRLVDVAQD +V  +DCGT   +     +  G+V  +L E  LGRV +ED++ P +
Sbjct: 792  GYLTRRLVDVAQDCIVRLNDCGTENAITAEAAVNDGEVVASLGERVLGRVAAEDVVDPAS 851

Query: 854  DEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGE 913
             EV++ +  L+DE+   +I  +S+  +++RS +TC++D G CAQCYGRDLARG  VN GE
Sbjct: 852  GEVIVAKGELIDERKADLIEQSSIQSMRMRSPLTCEADEGVCAQCYGRDLARGTKVNVGE 911

Query: 914  AVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGKL 973
            AVG+IAAQSIGEPGTQLTMRTFHIGG A     ++  +A   G +   NA  + N  G+ 
Sbjct: 912  AVGIIAAQSIGEPGTQLTMRTFHIGGIAQ-GGQQSFQEAGQEGKIAFRNANLLENTSGEK 970

Query: 974  VITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAG 1033
            ++  R  +L I+D  G  +   KL YG+ +  A+GD V  G+ +  W+ +T+PII E +G
Sbjct: 971  IVMGRNMQLLIVDGEGAERASFKLGYGTKVHVAEGDKVGRGDKLFEWDPYTLPIIAEKSG 1030

Query: 1034 RVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGT 1093
             V+F D++ G++V  +TDD TG++   V++  A P  G D++P + + D    + +    
Sbjct: 1031 VVRFADLVSGISVREETDDATGMTQKIVSDWRAAP-KGSDLKPEVLIADPETGEPVRNDA 1089

Query: 1094 DMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEP 1153
              P  Y +   AI++++DG  ++ GD +ARIP++    KDITGGLPRVA+LFEAR+PK+ 
Sbjct: 1090 GNPVTYPMSVDAILSIEDGMPISAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDH 1149

Query: 1154 AILAEHSGTVSFGKETKGKRRLII--TRDSGDTYEEMIPKHRQLNVFEGERIERGDVIAD 1211
            AI+AE  G V FG++ K KRR+ I  + ++ +  E M+PK + + V EG+ +++GD I D
Sbjct: 1150 AIIAEIDGYVRFGRDYKNKRRISIEPSDETMEPVEYMVPKGKHIPVAEGDFVQKGDYIMD 1209

Query: 1212 GPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDS 1271
            G  +PHDILR+ GI A+  Y+ NEVQ+VYRLQGVKINDKHIE IVRQML+K  I  +G++
Sbjct: 1210 GNPAPHDILRIMGIEALADYLINEVQDVYRLQGVKINDKHIEVIVRQMLQKWEILDSGET 1269

Query: 1272 EFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQETTRVL 1331
              L GE V+  Q +  N K + EG+ PA+ E  LLGITKASL T SFISAASFQETT+VL
Sbjct: 1270 TLLKGEHVDKLQFEAVNEKAIAEGRRPAQGEPILLGITKASLQTRSFISAASFQETTKVL 1329

Query: 1332 TEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPSAEQATDNLAAL 1391
            TEA+  GKRD L GLKENVIVGRLIPAGTG A  Q R+  + ++Q+     QA    AA 
Sbjct: 1330 TEASTMGKRDKLIGLKENVIVGRLIPAGTGGATQQMRRIAQERDQKVIEQRQAEAEEAAA 1389

Query: 1392 LNAGFSSD 1399
            L A  + D
Sbjct: 1390 LAAPMAED 1397