Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1414 a.a., DNA-directed RNA polymerase subunit beta' from Cupriavidus basilensis FW507-4G11

 Score = 1815 bits (4702), Expect = 0.0
 Identities = 913/1388 (65%), Positives = 1114/1388 (80%), Gaps = 7/1388 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MK LL+  K   + E+FDAIKIGLASP+ IRSWS+GEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKALLDLFKQVQQEEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRR+RMGHIELA+P AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGD-EFTAK 179
            PSR+G+++DM LRDIERVLYFE +VV EPGMT L++ Q+++E++Y+ + EE+G+ EF A 
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAFVVLEPGMTPLKKSQIMSEDDYIAKCEEYGEGEFVAM 180

Query: 180  MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
            MGAE I++LL  +D+  + E +R EL TT SE K KK  KRLK++EAF  SG KPEWMIL
Sbjct: 181  MGAEGIRELLRGIDIEKQIETIRAELQTTGSEAKIKKFAKRLKVLEAFQRSGIKPEWMIL 240

Query: 240  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
             VLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL AP+IIVRNEKRML
Sbjct: 241  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QE+VD+LLDNGRRG+A+TG+NKRPLKSLA+MIKGK GRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
             L+LHQCGLPK MALELFKPFI+ KLET G+ATTIKAAKK VE + AVVWDIL+EVIREH
Sbjct: 361  TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTAVVWDILEEVIREH 420

Query: 420  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+E
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 480

Query: 480  ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRT 539
            ARTLM+++NN+L PA+GDP IVPSQDVVLGLYY TR+KIN KGEG+     +E  +AY  
Sbjct: 481  ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGKGEGLTFADISEVIRAYEN 540

Query: 540  KTAELHARVKVRITETIKHE-----NGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQ 594
            K  EL +RV VRITE    +     + +   +  +  TTVGRA++ +I+PKGLP+S++N+
Sbjct: 541  KEVELASRVNVRITEYELVDKDAVGDARFAPKITLQATTVGRAIMSEILPKGLPFSVLNK 600

Query: 595  KLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEI 654
             L KK+IS L+N A+RK GL++TVIFAD+++ +GF  A  +G+S+ IDDM+VP  K   I
Sbjct: 601  PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPQKEKII 660

Query: 655  AEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQE 714
            ++A  +V+E  +Q+ SGLVT  ERYN V+DIW +  D+V KAMME L  E V++R G   
Sbjct: 661  SDAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQHEDVVDRHGNTV 720

Query: 715  KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFI 774
            KQ+SFNSIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFI
Sbjct: 721  KQDSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 780

Query: 775  STHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVA 834
            STHGARKGLADTALKTANSGYLTRRLVDV QD+VV E DCGT  GV M   +EGG+V  A
Sbjct: 781  STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTTNGVAMKALVEGGEVIEA 840

Query: 835  LTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGC 894
            L +  LGRV   D++ P T E  I   TLLDE    +I+   VD++KVR+ ++CD+ +G 
Sbjct: 841  LRDRILGRVTVSDVVNPETQETAIEAGTLLDEDLVDMIDAIGVDEVKVRTPLSCDTRYGL 900

Query: 895  CAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKN 954
            C  CYGRDL RG LVN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS +A  +S++AK 
Sbjct: 901  CGMCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKA 960

Query: 955  NGSVKL-HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAA 1013
             G+V+     ++VTN  G+L++ SR+ E  I D+ GR +E+HK+PYG+ L   DG A+ A
Sbjct: 961  TGTVRFTATMRYVTNAKGELIVISRSGEALITDDHGRERERHKIPYGATLLVQDGQAIKA 1020

Query: 1014 GETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKD 1073
            G  +A W+A T PI++E  G  +F ++ +GVTV++Q D++TGLS+  V +A  R AA K 
Sbjct: 1021 GTQLATWDALTRPIVSEYTGTTKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG 1080

Query: 1074 MRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKD 1133
            +RP +KL+DANG++V IPGTD          A++ + DG +V+VG+ LARIP +S   +D
Sbjct: 1081 LRPQVKLLDANGQEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD 1140

Query: 1134 ITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHR 1193
            ITGGLPRVA+LFEAR PK+ A+LAE +GT SFGK+TKGK+RL+IT   G+ +E +I K +
Sbjct: 1141 ITGGLPRVAELFEARSPKDAAVLAEVTGTTSFGKDTKGKQRLVITDLDGNAHEFLITKEK 1200

Query: 1194 QLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIE 1253
            Q+ V +G+ + +G++I +GP  PHDILRL+GI  +  YI +EVQ+VYRLQGVKINDKHIE
Sbjct: 1201 QVLVHDGQVVNKGEMIVEGPADPHDILRLKGIEELAHYIVDEVQDVYRLQGVKINDKHIE 1260

Query: 1254 TIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASL 1313
             IVRQMLR+  I   GD++F+PGE VE S++   N +++ EGK PA +E  LLGITKASL
Sbjct: 1261 VIVRQMLRRVQIADVGDTKFIPGEQVERSELLDENDRVIAEGKRPATYENLLLGITKASL 1320

Query: 1314 ATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRA 1373
            +T+SFISAASFQETTRVLTEAA+ GK DDLRGLKENVIVGRLIPAGTG AYH+ R+A+ A
Sbjct: 1321 STDSFISAASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGLAYHRARKAREA 1380

Query: 1374 QEQQGPSA 1381
             E++   A
Sbjct: 1381 AERERAQA 1388