Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

 Score = 1608 bits (4165), Expect = 0.0
 Identities = 829/1399 (59%), Positives = 1038/1399 (74%), Gaps = 23/1399 (1%)

Query: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61
            +++LN          FD I+I LASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCARI
Sbjct: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRR+RMGHIELASPVAHIWFLKSLP
Sbjct: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122

Query: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDE-FTAKM 180
            SRI +++DMPL+DIERVLYFE Y+VTEPG+T L++ Q+L+E++Y+   EE+GD+ FTA++
Sbjct: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI++LL ++DL  EAE++REEL  T S+ K+KK +KRLK++EAF  SGN+PEWM+LT
Sbjct: 183  GAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLT 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQ
Sbjct: 243  VVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LH+CGLPKKMALELFKPFIY++L+ +GL+ T+K +K+MVERE+  VWDIL+EVIREHP
Sbjct: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHP 422

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G PIIVPSQD+VLGLYY++  +    GEG       E E A    
Sbjct: 483  RVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAG 542

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVP--KGLPYSLVNQKLGK 598
               LHA++K R TE      G L    K+IDTT GR  +  ++P    + + L+ + L K
Sbjct: 543  VVSLHAKIKARHTEMT--PEGVLL--RKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTK 598

Query: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658
            K+I NL++  YR  G K TVIFAD++M  GF  AA +G+S G DD+++P  K   + E  
Sbjct: 599  KEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETR 658

Query: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718
            +   E ++Q+  GL+T GE+YNKV+D WA   DRVA  MM  L     +  + E  +++ 
Sbjct: 659  KLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQ----MKHKDENGREKE 714

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778
             N+IYMMA SGARGS AQ++QL GMRGLMA+P G IIETPI +NFKEGL V +YF STHG
Sbjct: 715  INAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHG 774

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838
            ARKGLADTALKTANSGYLTRRLVDVAQD ++ E DCGT +G+ +   +EGGDV V+L   
Sbjct: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSR 834

Query: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898
             LGR  +ED+  PGT E+++P +T +DE     I    V  +KVRSV+TC++  G C  C
Sbjct: 835  VLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGAC 894

Query: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGG A   A ++  +A N G+V
Sbjct: 895  YGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQ-VAEQSFFEASNEGTV 953

Query: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
            ++     V   DG LVI SR + ++++ + G+ +E +K PYG+ L   DGD V  G+ + 
Sbjct: 954  RVIGPT-VVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLG 1011

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
            +W+ +T PIITEVAG+++  D++DG+++  + D+ TG++   V +     A G D+RPA+
Sbjct: 1012 DWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRT-SARGSDLRPAM 1070

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
             ++  +G    +      A+Y L   AI+++ DG EV  G+ +ARIP +    +DITGGL
Sbjct: 1071 GVLSEDGSYKRL-SNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRD------SGDTYEEMIPKH 1192
            PRVA+LFEAR+PK+ A++AE  G V FGK+ K KRR+ IT D        +  E +IPK 
Sbjct: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189

Query: 1193 RQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHI 1252
            + + V +G+ I +G+ I DG   PHDILR+ G+ A+  ++ +E+QEVYRLQGV INDKHI
Sbjct: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249

Query: 1253 ETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKAS 1312
            ETIVRQML+K  I   GD+  + G+ ++  +      K +  G  PA  +  LLGITKAS
Sbjct: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309

Query: 1313 LATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG-FAYHQDRQAK 1371
            L T+SFISAASFQETTRVLTEA+V GK D L GLKENVIVGRLIPAGTG +     R A 
Sbjct: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAA 1369

Query: 1372 RAQEQQGPSAEQATDNLAA 1390
            +  EQ     E A + L A
Sbjct: 1370 KRDEQLAQQREDAMEPLPA 1388