Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Paraburkholderia bryophila 376MFSha3.1

 Score = 1826 bits (4729), Expect = 0.0
 Identities = 913/1384 (65%), Positives = 1120/1384 (80%), Gaps = 7/1384 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MK LL+  K   + E FDAIKIGLASPD IRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSR+G+++DM LRDIERVLYFE YVV +PGMT L+  Q++TEE+Y +++EE+GDEF A+M
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAE +++LL ++++  + E +R EL  T SE K KK  KRLK++EAF  SG KP+WM+L 
Sbjct: 181  GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VD+LLDNGRRG+A+TG+NKRPLKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPK MALELFKPFI++KLE  G+ATTIKAAKK VE +  VVWDIL+EVIREHP
Sbjct: 361  LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+EA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            RTLM+++NN+L PA+GDP IVPSQD+VLGLYY TRE +NAKGEG+  TG +EA +AY  K
Sbjct: 481  RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK 540

Query: 541  TAELHARVKVRITETIKHENGK-----LTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQK 595
              EL +RV VRITE + +E+          +  +  TTVGRA+L +I+P GLP+S++N+ 
Sbjct: 541  EVELASRVNVRITEMVHNEDKSEGAPAFVPKISLYATTVGRAILSEILPPGLPFSVLNKP 600

Query: 596  LGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIA 655
            L KK+IS L+N A+RK GL++TVIFADQ+M +GF  A  +G+S+ +DDM+VP  K T + 
Sbjct: 601  LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG 660

Query: 656  EAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEK 715
            +A ++V+E   Q+ SGLVT+ ERYN V+DIW++T++ V KAMME LS+E V++R G + +
Sbjct: 661  DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNETR 720

Query: 716  QESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFIS 775
            QESFNSIYMMADSGARGSA QIRQLAGMRGLMA+PDGSIIETPITANF+EGLNVLQYFIS
Sbjct: 721  QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 780

Query: 776  THGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVAL 835
            THGARKGLADTALKTANSGYLTRRLVDV QD+VV E DCGT  GV M   +EGG+V  AL
Sbjct: 781  THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL 840

Query: 836  TELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCC 895
             +  LGRV   D++ P + E L    +LLDE   + I    +D+++VR+ +TC++ +G C
Sbjct: 841  RDRILGRVAVADVVNPESQETLYEAGSLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC 900

Query: 896  AQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNN 955
            A CYGRDL RG LVN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS AA  +S++AK+N
Sbjct: 901  AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 960

Query: 956  GSVKLHNA-KFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAG 1014
            G+V+  +  ++VTN  G+ ++ SR+ E  I D+ GR +E+HK+PYG+ L + DG  + AG
Sbjct: 961  GTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG 1020

Query: 1015 ETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPA-AGKD 1073
              +A W+  T PIITE  G V+F ++ +GVTV++Q DD+TGLS+  V +   R + A K 
Sbjct: 1021 TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT 1080

Query: 1074 MRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKD 1133
            +RP +KL+DANG++V IP T+   Q      A++ + DG +V VG+ LARIP +S   +D
Sbjct: 1081 VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD 1140

Query: 1134 ITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHR 1193
            ITGGLPRVA+LFEAR PK+  ILAE +GT SFGK+TKGK+RL+IT   G+ +E +I K +
Sbjct: 1141 ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK 1200

Query: 1194 QLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIE 1253
            Q+ V +G+ + +G++I DGP  PHDILRL+G+ A++ YI +EVQ+VYRLQGVKINDKHIE
Sbjct: 1201 QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE 1260

Query: 1254 TIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASL 1313
             IVRQMLR+  IT  GD+ F+PGE VE S +   N +++ E K PA +E  LLGITKASL
Sbjct: 1261 VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL 1320

Query: 1314 ATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRA 1373
            +T+SFISAASFQETTRVLTEAA+ GKRDDLRGLKENVIVGRLIPAGTG A+H+ R++K  
Sbjct: 1321 STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL 1380

Query: 1374 QEQQ 1377
             +++
Sbjct: 1381 SDRE 1384