Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1357 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Pseudomonas fluorescens FW300-N2E2

 Score = 1934 bits (5011), Expect = 0.0
 Identities = 973/1359 (71%), Positives = 1142/1359 (84%), Gaps = 20/1359 (1%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIE----QDPEGQYGLEAAFRSV 56
            M YSYTEKKRIRKDF   P V+D+PYLL+IQLDS+ +F++    +D     GL AAF+SV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116
            FPI SY+GN+ L+YV YRLGEP FDVKEC +RGVTY+ PLRVK+RL+IFDK++    +KD
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120

Query: 117  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
            IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARI
Sbjct: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180

Query: 177  IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
            IPYRGSWLDFEFDPKD ++VRIDRRRKLPAS++LRALG T+ E+LD F+    F V+ + 
Sbjct: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVQGEN 240

Query: 237  LMMELVPERLRGETATFDIEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
            L +ELVP+RLRGE A  DI+ D GKV VE+GRR+TARHI QLEK G+  ++VP++Y++G+
Sbjct: 241  LSLELVPQRLRGEIAVLDIQDDKGKVIVEQGRRITARHINQLEKAGIKELQVPLDYVLGR 300

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
             +AK  V+ ATGE++   N E++ E LA +++A   ++E L+TND+D GPF+S+TL++DS
Sbjct: 301  TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS 360

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415
            T +++ ALVEIYRMMRPGEPPTK+AAE+LF +LFFS ERYDLS VGRMKFN  IGR + E
Sbjct: 361  TGNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE 420

Query: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475
              G L++ DI+ V+K L+ IRNGKG VDDIDHLGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 421  GSGVLNKDDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV 480

Query: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535
            KERLS+ + + +MPQDLINAKP++AAVKEFFGSSQLSQFMDQNNPLSE+THKRR+SALGP
Sbjct: 481  KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP 540

Query: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+A+AR N+YGFLE+PYR V 
Sbjct: 541  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK 600

Query: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDV 655
            + +VTDE+ +LSAIEE   VIAQA+A + ++    DELV  R   E  +   E V  MDV
Sbjct: 601  DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMDV 660

Query: 656  ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVT 715
            +  QVVS+AASLIPFLEHDDANRALMG+NMQRQAVPTLR++KPLVGTG+ERNVA DSGV 
Sbjct: 661  SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC 720

Query: 716  AVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 775
             VA+RGGVI SVDASRIVV+V ++E+  GEAG+DIYNLTKYTRSNQNTCINQRP V  G+
Sbjct: 721  VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD 780

Query: 776  PVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE 835
             V R D++ADGPSTD+GELALGQNMRIAFM WNG+NFEDSI +SERVVQ+DRFTTIHIQE
Sbjct: 781  RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE 840

Query: 836  LSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 895
            L+CVARDTKLG EEITADIPNVGEAAL+KLDE+GIVY+GAEV  GDILVGKVTPKGETQL
Sbjct: 841  LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL 900

Query: 896  TPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKE 955
            TPEEKLLRAIFGEKASDVKDTSLRVP    GTVIDVQVFTRDGVE+D RAL IE+ QL E
Sbjct: 901  TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE 960

Query: 956  AKKDLTEEFQILEGGLLARVRSVLLA----GG--------YTEAKLGSIERKKWLEQTLE 1003
             +KDL EEF+I+EG    R+RS L+     GG         T+  L  +E  +W +  + 
Sbjct: 961  IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQEITDEVLDGLEHGQWFKLRMA 1020

Query: 1004 NEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPG 1063
             + L  QLE+      + +   D KFE K+RK+ QGDDLAPGVLKIVKVYLA++RRIQPG
Sbjct: 1021 EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG 1080

Query: 1064 DKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKG 1123
            DKMAGRHGNKGV+S I PVEDMP+D NG PVD+VLNPLGVPSRMN+GQILE HLGLAAKG
Sbjct: 1081 DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG 1140

Query: 1124 IGDKINQMIKEQQELAKLREFLQKVY-DLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182
            +G+KIN+MI+EQ+++A LR+FL ++Y ++G   + +D    SD+++  LA NLR G+P+A
Sbjct: 1141 LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELD--TFSDQEILDLAKNLRGGVPMA 1198

Query: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242
            TPVFDGA ES IKAML+LADLP SGQ+ LFDGRTG+ FERPVTVGYMYMLKLNHLVDDKM
Sbjct: 1199 TPVFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKM 1258

Query: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1302
            HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
Sbjct: 1259 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1318

Query: 1303 MYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
            MYKNIVDG+H MEPGMPESFNVL+KEIRSLGI+I+LE E
Sbjct: 1319 MYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE 1357