Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1387 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Xanthomonas campestris pv. campestris strain 8004

 Score = 1829 bits (4737), Expect = 0.0
 Identities = 922/1380 (66%), Positives = 1117/1380 (80%), Gaps = 42/1380 (3%)

Query: 3    YSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQ----YGLEAAFRSVFP 58
            YS+TEKKRIRKDFG +  +L++P+LL+IQ+DS+ +F+++D E       GL AA +SVFP
Sbjct: 8    YSFTEKKRIRKDFGKQRSILEVPFLLAIQVDSYREFLQEDVEPNKRKDLGLHAALKSVFP 67

Query: 59   IQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIK 118
            I SY+GN+ L+YV Y+LGEPVFD +EC+ RG++Y  PLRV +RLVI+D+++    +K +K
Sbjct: 68   ISSYSGNAALEYVGYKLGEPVFDERECRQRGMSYGAPLRVTVRLVIYDRESSTKAIKYVK 127

Query: 119  EQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIP 178
            EQEVY+GEIPLMTENGTF++NGTERVIVSQLHRSPGVFFD D+GKTHSSGK+LY+ARIIP
Sbjct: 128  EQEVYLGEIPLMTENGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIP 187

Query: 179  YRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVK-DQTL 237
            YRGSWLDFEFDPKD L+ RIDRRRKLP SI+LRALG  + E+L  FFE   F +  D+ +
Sbjct: 188  YRGSWLDFEFDPKDALFTRIDRRRKLPVSILLRALGYNNEEMLAEFFEINTFHINPDEGV 247

Query: 238  MMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVS 297
             +ELVPERLRGET  FD+    KV VE G+R+TARH++QLE  GV  + VP +Y+VG++ 
Sbjct: 248  QLELVPERLRGETLNFDLADGDKVIVEAGKRITARHVKQLEAAGVAALAVPDDYLVGRIL 307

Query: 298  AKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTT 357
            + D V+ +TGEL+  AN EIS + LA   +AG   +  L+ NDLD GP++S TLR+D T 
Sbjct: 308  SHDVVDGSTGELLANANDEISEDQLAAFRKAGVDAVGTLWVNDLDRGPYLSNTLRIDPTK 367

Query: 358  DRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQ 417
             ++ ALVEIYRMMRPGEPPTKEAA++LF +LFF+ ERYDLSTVGRMKFN  +GR++   +
Sbjct: 368  TQLEALVEIYRMMRPGEPPTKEAAQNLFHNLFFTFERYDLSTVGRMKFNHRVGRKEVLGE 427

Query: 418  GTL----------------------DEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRS 455
              L                      D  DI+EV+K L  IRNG+G VDDIDHLGNRR+RS
Sbjct: 428  SVLYDKKYFAERNDEESKRLVAEHADTSDILEVIKVLTEIRNGRGVVDDIDHLGNRRVRS 487

Query: 456  VGEMAENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFM 515
            VGEMAEN FRVGLVRVERAVKERLS+ + + + PQ+LINAKP++AA+KEFFGSSQLS+FM
Sbjct: 488  VGEMAENVFRVGLVRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSRFM 547

Query: 516  DQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSL 575
            DQNNPLSEVTHKRR+SALGPGGLTRERAGFEVRDVH THYGR+C IETPEGPNIGLINSL
Sbjct: 548  DQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSL 607

Query: 576  SAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVT 635
            + FAR N+YGFLETPYR+V++G V+D+V+YLSAIEE ++VIAQANA    +    ++ V 
Sbjct: 608  AVFARTNQYGFLETPYRKVLDGKVSDDVEYLSAIEENEYVIAQANALTDAKNMLTEQFVP 667

Query: 636  ARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRS 695
             R +GES L P   V +MDV+  Q VS+AA+L+PFLEHDDANRALMGANMQRQAVPTLRS
Sbjct: 668  CRFQGESLLKPPAEVHFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVPTLRS 727

Query: 696  EKPLVGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPG-EAGIDIYNLT 754
            +KPLVGTGIER VA DSGVT  A+RGGVI+ +DA+RIVVKVNE E+  G +AG+DIYNL 
Sbjct: 728  QKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKVNEAEIGGGTDAGVDIYNLI 787

Query: 755  KYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFED 814
            KYTRSNQNTCINQRP V  G+ +ARGDVLADGPSTD+GELALGQNM IAFMPWNGYNFED
Sbjct: 788  KYTRSNQNTCINQRPLVNVGDVIARGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFED 847

Query: 815  SILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIG 874
            SIL+SERVV++DR+TTIHI+EL+CVARDTKLG EEI+ADIPNV E AL++LDESG+VYIG
Sbjct: 848  SILLSERVVEEDRYTTIHIEELTCVARDTKLGPEEISADIPNVSEQALNRLDESGVVYIG 907

Query: 875  AEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVF 934
            AEV+ GDI+VGKVTPKGE+QLTPEEKLLRAIFGEKASDVKD+SLRVP  + GTVIDVQVF
Sbjct: 908  AEVRAGDIMVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDVQVF 967

Query: 935  TRDGVEKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLLA----GG------- 983
            TRDG+EKDKRA +IE+ ++K  KKD  ++F+ILE  + AR+RS ++     GG       
Sbjct: 968  TRDGIEKDKRARQIEESEIKRVKKDFDDQFRILEAAIYARLRSQIVGKVANGGPNLKKGD 1027

Query: 984  -YTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDL 1042
              T+A L  +++  W +  +++++  + +E+  +Q    + +F+ +F  KR KITQGDDL
Sbjct: 1028 NVTDAYLDGLKKSDWFQLRMKDDDAADAIERAQKQIQAHEKEFEARFADKRGKITQGDDL 1087

Query: 1043 APGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLG 1102
            APGVLK+VKV+LAVKRRIQPGDKMAGRHGNKGV+S + PVEDMPY   G+PVDIVLNPLG
Sbjct: 1088 APGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNVVPVEDMPYMATGEPVDIVLNPLG 1147

Query: 1103 VPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAKLREFLQKVY--DLGDTRQRVDI 1160
            VPSRMNIGQILEVHLG AAKG+G KI +M++ Q  +++LR+FL  +Y  D     +RVD+
Sbjct: 1148 VPSRMNIGQILEVHLGWAAKGLGRKIQRMLEAQTAVSELRKFLDDIYNHDSAINAERVDL 1207

Query: 1161 SELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAF 1220
            S+ SDE++  L  NL  G+P+ATPVFDGA E+ IK MLELA+LP SGQ  L+DGRTG+AF
Sbjct: 1208 SQFSDEELLNLGKNLIDGVPMATPVFDGASEAEIKRMLELAELPQSGQTQLYDGRTGEAF 1267

Query: 1221 ERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1280
            +R  TVGYM+ LKLNHLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
Sbjct: 1268 DRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY 1327

Query: 1281 GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            GAAYTLQEMLTVKSDDV GR +MYKNIVDG H M  GMPESFNVL+KEIRSL IN+ELE+
Sbjct: 1328 GAAYTLQEMLTVKSDDVQGRNQMYKNIVDGEHEMVAGMPESFNVLVKEIRSLAINMELEE 1387