Pairwise Alignments
Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056
Subject, 1100 a.a., DNA-directed RNA polymerase subunit beta from Synechococcus elongatus PCC 7942
Score = 652 bits (1683), Expect = 0.0
Identities = 352/711 (49%), Positives = 466/711 (65%), Gaps = 16/711 (2%)
Query: 231 EVKDQTLMMELVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVE 290
E+K+Q + + +P L + TF I +V V + R + + E+D +
Sbjct: 95 EIKEQEVFIGDLP--LMTDRGTFIINGAERVIVNQIVRSPGVYYKS-ERDKNGRLTHNAS 151
Query: 291 YIVGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSET 350
I + + + + G + + ++ L A L G E+ + L H + +T
Sbjct: 152 LIPNRGAWLKFETDKNGLVWVRIDKTRKLSAQVLLKALGLSDNEIY--DKLRHPEYYQKT 209
Query: 351 LRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIG 410
+ + AL+E+YR +RPGEPPT + L ES FF +RYDL VGR K N +G
Sbjct: 210 IDKEGQFSEDEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLG 269
Query: 411 REDAEEQGTLDEVDIIEVMKKLISIRNGKG--EVDDIDHLGNRRIRSVGEMAENQFRVGL 468
A+ TL DI+ + LI++ G EVDDIDHLGNRR+RSVGE+ +NQ RVGL
Sbjct: 270 LNVADTVRTLTSEDILAAIDYLINLELDLGGCEVDDIDHLGNRRVRSVGELLQNQVRVGL 329
Query: 469 VRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKR 528
R+ER ++ER+++ D D++ P L+N KP+ AA+KEFFGSSQLSQFMDQ NPL+E+THKR
Sbjct: 330 NRLERIIRERMTVSDSDSLSPASLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKR 389
Query: 529 RISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLE 588
R+SALGPGGLTRERAGF VRD+H +HYGR+CPIETPEGPN GLI SL+ AR N+YGF+E
Sbjct: 390 RLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNDYGFIE 449
Query: 589 TPYRRVVNGVVTDEVD--YLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHP 646
TP+ RV G V ++ Y++A +E +A + + G + R + +
Sbjct: 450 TPFWRVEEGRVRKDLAPVYMTADQEDDLRVAPGDVATDDAGYILGTTIPVRYRQDFTTTT 509
Query: 647 REHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIER 706
E VDY+ ++ Q++S+A SLIPFLEHDDANRALMG+NMQRQAVP LR E+PLVGTG+E
Sbjct: 510 PERVDYVALSPVQIISVATSLIPFLEHDDANRALMGSNMQRQAVPLLRPERPLVGTGLEP 569
Query: 707 NVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCIN 766
A DSG+ + G I VDA+ I V + E Y L KY RSNQ+TC+N
Sbjct: 570 QAARDSGMVITSPVDGTISYVDATHIEVTADTGEKYG-------YALQKYQRSNQDTCLN 622
Query: 767 QRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDD 826
QRP V G+ V RG V+ADG +T+ GELALGQN+ +A+MPW GYN+ED+IL+SER+V DD
Sbjct: 623 QRPIVFEGDRVQRGQVIADGSATEKGELALGQNILVAYMPWEGYNYEDAILISERLVYDD 682
Query: 827 RFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGK 886
+T+IHI++ AR TKLG EEIT +IPNVGE AL +LDE+GI+ +GA V+ GDILVGK
Sbjct: 683 VYTSIHIEKFEIEARQTKLGPEEITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGK 742
Query: 887 VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRD 937
VTPKGE+ PEEKLLRAIFGEKA DV+D SLRVPN G V+DV++FTR+
Sbjct: 743 VTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKGRVVDVRLFTRE 793
Score = 296 bits (757), Expect = 9e-84
Identities = 204/509 (40%), Positives = 278/509 (54%), Gaps = 71/509 (13%)
Query: 849 EITADIPNVGEAALSK---------LDESGIVYIGAEVKGGDILV-GKVTPKGETQLTPE 898
E+TAD AL K L++ IV+ G V+ G ++ G T KGE L
Sbjct: 596 EVTADTGEKYGYALQKYQRSNQDTCLNQRPIVFEGDRVQRGQVIADGSATEKGELALG-- 653
Query: 899 EKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKK 958
+ +L A + + +D L ++ ++ V+T +EK EIE Q K +
Sbjct: 654 QNILVAYMPWEGYNYEDAIL-----ISERLVYDDVYTSIHIEK----FEIEARQTKLGPE 704
Query: 959 DLTEEFQILEGGLLARV--RSVLLAGGYTEAK---LGSIERKKWLEQTLENEELQNQLEQ 1013
++T E + L ++ ++ G + E+ +G + K +Q E + L+ +
Sbjct: 705 EITREIPNVGEDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGE 764
Query: 1014 LAEQY--DELKADFDKKFEAKRRKI---TQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068
A + L+ +K ++ QGD+L PG +V+VY+A KR+IQ GDKMAG
Sbjct: 765 KARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAG 824
Query: 1069 RHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKI 1128
RHGNKG+IS+I P EDMPY +G P+DIVLNPLGVPSRMN+GQ+ E LG A +
Sbjct: 825 RHGNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGWAGQ------ 878
Query: 1129 NQMIKEQQELAKLREFLQKVYDLGDTRQRVD-ISELSDEDVRTLAHNLRAGLPVATPVFD 1187
L D R +V E+ + L N +
Sbjct: 879 ----------------------LLDARFKVTPFDEMYGAEASRLTVNAK---------LS 907
Query: 1188 GAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARST 1247
A E + + + D P G++ ++DGRTG+ F+RPVTVG YMLKL HLVDDK+HARST
Sbjct: 908 EAREQTGQPWVFSDDEP--GKIQVYDGRTGEPFDRPVTVGRAYMLKLVHLVDDKIHARST 965
Query: 1248 GSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNI 1307
G YSLVTQQPLGGKAQ GGQRFGEMEVWALEAYGAAY LQE+LTVKSDD+ GR + I
Sbjct: 966 GPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQELLTVKSDDMQGRNEALNAI 1025
Query: 1308 VDGNHAMEPGMPESFNVLLKEIRSLGINI 1336
V G PG PESF VL++E++SL ++I
Sbjct: 1026 VKGKAIPRPGTPESFKVLMRELQSLCLDI 1054
Score = 156 bits (395), Expect = 9e-42
Identities = 89/206 (43%), Positives = 130/206 (63%), Gaps = 18/206 (8%)
Query: 19 PQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQSYNGNSELQYVS--YRLG 76
P +P L++IQ +SF F+E+ GL S PI Y G EL ++ Y+L
Sbjct: 9 PAAFHLPDLVAIQRNSFRWFLEE------GLIEELESFSPITDYTGKLELHFLGKQYKLK 62
Query: 77 EPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTENGTF 136
P +DV E + R TYS + V RL+ +K+ +IKEQEV++G++PLMT+ GTF
Sbjct: 63 RPKYDVDEAKRRDGTYSVQMYVPTRLI--NKETG-----EIKEQEVFIGDLPLMTDRGTF 115
Query: 137 VINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYV 196
+ING ERVIV+Q+ RSPGV++ S++ K +G++ +NA +IP RG+WL FE D ++V
Sbjct: 116 IINGAERVIVNQIVRSPGVYYKSERDK---NGRLTHNASLIPNRGAWLKFETDKNGLVWV 172
Query: 197 RIDRRRKLPASIILRALGKTSAEILD 222
RID+ RKL A ++L+ALG + EI D
Sbjct: 173 RIDKTRKLSAQVLLKALGLSDNEIYD 198