Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1380 a.a., DNA-directed RNA polymerase subunit beta from Sinorhizobium meliloti 1021

 Score = 1563 bits (4047), Expect = 0.0
 Identities = 786/1361 (57%), Positives = 1039/1361 (76%), Gaps = 27/1361 (1%)

Query: 4    SYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD-PEG---QYGLEAAFRSVFPI 59
            S+  ++R+RK FG  P+V ++P L+ +Q  S+++F+  D P+G     GL+A F+SVFPI
Sbjct: 6    SFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPQGGRPDEGLQAVFKSVFPI 65

Query: 60   QSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TVKDI 117
            + ++G S L++VSY    P FDV+EC+ R +TY+ PL+V LRL++FD D   G  ++KDI
Sbjct: 66   KDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDI 125

Query: 118  KEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARII 177
            KEQ VYMG++PLMT+NGTF++NGTERVIVSQ+HRSPGVFFD DKGK+HSSGK+L+ AR+I
Sbjct: 126  KEQNVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185

Query: 178  PYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTL 237
            PYRGSWLD EFD KD ++ RIDRRRK+P + +L ALG    EILD F+ K  ++   +  
Sbjct: 186  PYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYQRDGEGW 245

Query: 238  MMELVPERLRGETATFD-IEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
             +   P+ L+G+    D I+AD G+V VE G+++T R +RQL++ G+  ++   + + G 
Sbjct: 246  RVPFQPDALKGQKTLADMIDADTGEVVVESGKKLTPRLLRQLQEKGLKALKATDDDLYGN 305

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
              A+D VN  TGE+ + A  EI  + L  +  AG+ ++ VL  + ++ G ++  TL  D 
Sbjct: 306  YLAEDVVNFETGEIYLEAGDEIDEKTLPVILSAGFDEIPVLDIDHINIGAYIRNTLSADK 365

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415
              +R  AL +IYR+MRPGEPPT ++AE++F +LFF AERYDLS VGR+K N  +  +  +
Sbjct: 366  NENRQDALFDIYRVMRPGEPPTMDSAEAMFNALFFDAERYDLSAVGRVKMNMRLDLDVPD 425

Query: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475
               TL + DI+ V+K L+ +R+GKGE+DDID+LGNRR+RSVGE+ ENQ+R+GL+R+ERA+
Sbjct: 426  TVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAI 485

Query: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535
            KER+S  ++D VMPQDLINAKP +AAV+EFFGSSQLSQFMDQ NPLSE+THKRR+SALGP
Sbjct: 486  KERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGP 545

Query: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ FAR N+YGF+E+PYR++V
Sbjct: 546  GGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIV 605

Query: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDV 655
            +G VT++V YLSA+EE ++ +AQAN+ L ++G F++E V  R  GE  L PR++++ MDV
Sbjct: 606  DGKVTNDVVYLSAMEEAKYHVAQANSVLDDDGSFSEEFVVCRHAGEVMLAPRDNINLMDV 665

Query: 656  ATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVT 715
            +  Q+VS+AA+LIPFLE+DDANRALMG+NMQRQAVP LR+E P VGTG+E  VA DSG  
Sbjct: 666  SPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVARDSGAA 725

Query: 716  AVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGE 775
              A+RGG++  VDA+RIV++   E+L P ++G+DIY L K+ RSNQNTC+NQRP V  G+
Sbjct: 726  IAARRGGIVDQVDATRIVIRAT-EDLDPSKSGVDIYRLQKFQRSNQNTCVNQRPLVTVGD 784

Query: 776  PVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQE 835
             + +GD++ADGPSTDLG+LALG+N  +AFMPWNGYN+EDSIL+SER+V+DD FT+IHI+E
Sbjct: 785  VINKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEE 844

Query: 836  LSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQL 895
               +ARDTKLG EEIT DIPNV E AL  LDE+GIVYIGAEV+ GDILVGK+TPKGE+ +
Sbjct: 845  FEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPM 904

Query: 896  TPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKE 955
            TPEEKLLRAIFGEKASDV+DTS+R+P    GTV++V+VF R GVEKD+RA+ IE+ +++ 
Sbjct: 905  TPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIEREEIER 964

Query: 956  AKKDLTEEFQILEGGLLARVRSVL-----LAG--GY------TEAKLGSIERKKWLEQTL 1002
              KD  +E  IL+  + AR+  +L     +AG  G+      +   +    R +W    +
Sbjct: 965  LAKDRDDEQAILDRNVYARLVDMLRGHVAVAGPKGFKKGTELSNVVISEYPRSQWWMFAI 1024

Query: 1003 ENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062
            E+E+ Q ++E L  QYDE K+  +++F  K  K+ +GD++ PGV+K+VKV++AVKR+IQP
Sbjct: 1025 EDEKAQGEIEALRAQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQP 1084

Query: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAK 1122
            GDKMAGRHGNKGV+S+I P+EDMP+ E+G  VD+VLNPLGVPSRMN+GQILE HLG A  
Sbjct: 1085 GDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLGWACA 1144

Query: 1123 GIGDKINQMI---KEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGL 1179
            G+G KI  M+   K   ++  LR+ +  V  +G   +   I +  DE +  LA   R G+
Sbjct: 1145 GMGKKIGAMLDAYKAGADIQPLRDTIDSV--IGSGPKGEPIKQYDDESIVRLAEQTRRGV 1202

Query: 1180 PVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVD 1239
             +ATPVFDGA E+ +  MLE A L  +GQ TL+DGRTG+ F+R VTVGY+YMLKLNHLVD
Sbjct: 1203 SIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTVGYIYMLKLNHLVD 1262

Query: 1240 DKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG 1299
            DK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV G
Sbjct: 1263 DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAG 1322

Query: 1300 RTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            RTK+Y+ IV G+   E G+PESFNVL+KE+RSLG+++ELE+
Sbjct: 1323 RTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELEN 1363