Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta (RefSeq) from Shewanella amazonensis SB2B

 Score = 2158 bits (5591), Expect = 0.0
 Identities = 1077/1342 (80%), Positives = 1208/1342 (90%), Gaps = 1/1342 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSY+EKKRIRKDFG RPQVLDIPYLLSIQLDSF+KF +QDP G+ GLEAAFRSVFPI+
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            S++GNSELQYVSY+LGEPVFDVKECQIRGVTYS PLRVKLR+V+FD++A  GTVKDIKEQ
Sbjct: 61   SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLFDREAAPGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMG+IPLMTENGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGKVLYNARIIPYR
Sbjct: 121  EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKD L+VRIDRRRKLPA+IILRAL  ++ +ILDIFFE+V+F +K  +L+M+
Sbjct: 181  GSWLDFEFDPKDALFVRIDRRRKLPATIILRALDFSTQDILDIFFERVDFTIKKDSLVMK 240

Query: 241  LVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAK 299
            L+PERLRGETA++DI +A+G + VEKGRR+TARHIRQLEK     +EVPVEYIVGK++A+
Sbjct: 241  LLPERLRGETASYDIKDAEGNIVVEKGRRITARHIRQLEKTNTTELEVPVEYIVGKIAAQ 300

Query: 300  DYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDR 359
            DY++  TGE+++TAN EI LE LA LS AG K +  L+ N+LDHG ++S+TLR+DSTT+R
Sbjct: 301  DYIDPDTGEVLVTANNEIRLEDLAQLSLAGIKDISTLYINELDHGAYISDTLRIDSTTNR 360

Query: 360  ISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 419
            + ALVEIYRMMRPGEPPTK+AAE+LF++LFFS ERYDLS VGRMKFN  +   D    G 
Sbjct: 361  LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLEIADDVGTGV 420

Query: 420  LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479
            L   DI+ VMKK+I IRNG  EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV+ERL
Sbjct: 421  LSNDDIVAVMKKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL 480

Query: 480  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 539
            SLGDL+ +MPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
Sbjct: 481  SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 540

Query: 540  RERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVV 599
            RERAGFEVRDVH THYGRLCPIETPEGPNIGLINSL+ FAR N YGFLETPYR+VV+GVV
Sbjct: 541  RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLATFARTNSYGFLETPYRKVVDGVV 600

Query: 600  TDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQ 659
            TD+V+YLSAIEEG++VIAQAN +L  EG   +E V  R KGES       + YMDV+  Q
Sbjct: 601  TDDVEYLSAIEEGRYVIAQANIELDGEGRILEEQVACRHKGESTFMRASDIQYMDVSPQQ 660

Query: 660  VVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAK 719
            ++S+AASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIER +AVDSGV   AK
Sbjct: 661  IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERALAVDSGVVVAAK 720

Query: 720  RGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVAR 779
            RGGVI  VDASRIVVKVNE+EL PGEAGIDIYNLTKYTRSNQNTCINQRPC   G+P+ R
Sbjct: 721  RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCQVGDPIVR 780

Query: 780  GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCV 839
            GDVLADGPSTDLG+LALGQNMR+AFMPWNGYNFEDSIL+SERVVQDDRFTTIHIQELSC+
Sbjct: 781  GDVLADGPSTDLGDLALGQNMRVAFMPWNGYNFEDSILISERVVQDDRFTTIHIQELSCI 840

Query: 840  ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 899
            ARDTKLG+EEITADIPNVGE+ALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
Sbjct: 841  ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 900

Query: 900  KLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKD 959
            KLLRAIFGEKASDVKD+SLRVPNSV GTVIDVQVFTRDGVEKDKRA+EIE+M + +A+KD
Sbjct: 901  KLLRAIFGEKASDVKDSSLRVPNSVTGTVIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD 960

Query: 960  LTEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYD 1019
            L+EEF+ILE G+L+R R++LLAGGYT+A+L +I RK+ L Q +++E  Q +LEQLAEQ++
Sbjct: 961  LSEEFKILEEGVLSRARNLLLAGGYTQAQLDAIPRKELLTQVIDDETKQTELEQLAEQHE 1020

Query: 1020 ELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079
            ELKADFDKKFE KRRKITQGDDLAPGVLKIVKVYLAVKR IQPGDKMAGRHGNKGVISKI
Sbjct: 1021 ELKADFDKKFEHKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI 1080

Query: 1080 NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELA 1139
             P+EDMPYDE G PVDIVLNPLGVPSRMNIGQ+LEVH+G AAKGIG++I  M++EQ+E+A
Sbjct: 1081 CPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHMGAAAKGIGNRIQAMLEEQREVA 1140

Query: 1140 KLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLE 1199
            +LR ++++ YDLG+T+Q+VDI   +DE+V  LA +L+ GLP ATP FDGA E  IK MLE
Sbjct: 1141 ELRGYIKQAYDLGETQQKVDIESFTDEEVIRLAKHLKDGLPTATPAFDGAKEKEIKQMLE 1200

Query: 1200 LADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
            LA LP SGQL LFDGRTG+AFER VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
Sbjct: 1201 LAGLPTSGQLRLFDGRTGNAFEREVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260

Query: 1260 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMP 1319
            GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT+MYKNIVDGNH M+PGMP
Sbjct: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMP 1320

Query: 1320 ESFNVLLKEIRSLGINIELEDE 1341
            ESFNVLLKEIRSLGINIEL+ E
Sbjct: 1321 ESFNVLLKEIRSLGINIELDQE 1342