Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1378 a.a., DNA-directed RNA polymerase subunit beta from Phaeobacter inhibens DSM 17395

 Score = 1580 bits (4091), Expect = 0.0
 Identities = 808/1377 (58%), Positives = 1033/1377 (75%), Gaps = 41/1377 (2%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFI-----EQDPEGQYGLEAAFRS 55
            M  S+  +KR+RK +G   +VLD+P L+ +Q  S++ F+     EQ  +G+ G+   F+S
Sbjct: 1    MAQSFLGQKRLRKYYGKIREVLDMPNLIEVQKSSYDLFLRSGDAEQPLDGE-GIMGVFQS 59

Query: 56   VFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--T 113
            VFPI+ +N  S L++V Y    P +DV+EC  R +TYS PL+V LRL++FD D   G  +
Sbjct: 60   VFPIKDFNETSVLEFVKYSFERPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKS 119

Query: 114  VKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYN 173
            VKDIKEQ+VYMG++PLMT NGTFV+NGTERVIVSQ+HRSPGVFFD DKGKTHSSGK+L+ 
Sbjct: 120  VKDIKEQDVYMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA 179

Query: 174  ARIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEV- 232
             RIIPYRGSWLDFEFD KD ++ RIDRRRKLP + +L ALG     I+D ++  VNF++ 
Sbjct: 180  CRIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLE 239

Query: 233  KDQTLMMELVPERLRGETATFDI--EADGKVYVEKGRRVTARHIRQLEKDG-VNFIEVPV 289
            K +  +    PER+RG   T+D+   A G+++ E G++VT R ++++  +G +  + VP 
Sbjct: 240  KSRGWVTPFFPERVRGTRPTYDLVDAATGEIFAEAGKKVTPRAVKKMIDEGNITDLLVPF 299

Query: 290  EYIVGKVSAKDYVNEATGELIITANQEISLE----------ALANLSQAGYKKLEVLFTN 339
            E+IVGK  AKD +NE  G + + A  E++LE           +  L  AG   + VL  +
Sbjct: 300  EHIVGKFVAKDIINEENGAIYVEAGDELTLEYDKGGELIGGTVKELIDAGITDIPVLDID 359

Query: 340  DLDHGPFMSETLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLST 399
            +++ GP+M  T+  D    R +AL++IYR+MRPGEPPT EAA +LF++LFF +ERYDLS 
Sbjct: 360  NINVGPYMRNTMAQDKNMGRDTALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSA 419

Query: 400  VGRMKFNSSIGREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEM 459
            VGR+K N  +  +  + Q TL + DII  +K L+ +R+GKG++DDIDHLGNRR+RSVGE+
Sbjct: 420  VGRVKMNMRLALDAEDTQRTLRKEDIISCIKALVELRDGKGDIDDIDHLGNRRVRSVGEL 479

Query: 460  AENQFRVGLVRVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNN 519
             ENQ+RVGL+R+ERA+KER+S  ++D VMPQDLINAKP +AAV+EFFGSSQLSQFMDQ N
Sbjct: 480  MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN 539

Query: 520  PLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFA 579
            PLSEVTHKRR+SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ FA
Sbjct: 540  PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA 599

Query: 580  RCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQK 639
            R N+YGF+ETPYR V +  VTDEV Y+SA EE +  +AQANA L E+G F ++LV+ RQ 
Sbjct: 600  RVNKYGFIETPYRVVNDAKVTDEVHYMSATEEMRHTVAQANATLDEDGKFINDLVSTRQS 659

Query: 640  GESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPL 699
            G+  L PRE VD +DV+  Q+VS+AASLIPFLE+DDANRALMG+NMQRQAVP LR+E PL
Sbjct: 660  GDYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPL 719

Query: 700  VGTGIERNVAVDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRS 759
            VGTGIE  VA DSG   +AKRGG+I  +DA RIV++    +L  G+AG+DIY + K+ RS
Sbjct: 720  VGTGIEEIVARDSGAAIMAKRGGIIDQIDAQRIVIRAT-SDLEMGDAGVDIYRMRKFQRS 778

Query: 760  NQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVS 819
            NQNTCINQRP V  G+ V +G+V+ADGPSTD+GELALG+N+ +AFMPWNGYN+EDSIL+S
Sbjct: 779  NQNTCINQRPLVKVGQEVRKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILIS 838

Query: 820  ERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKG 879
            ER+ +DD FT+IHI+E    ARDTKLG EEIT DIPNVGE AL  LDE+GIVYIGA+V+ 
Sbjct: 839  ERIARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEP 898

Query: 880  GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGV 939
            GDILVGK+TPKGE+ +TPEEKLLRAIFGEKASDV+DTSLRV     GTV++V+VF R GV
Sbjct: 899  GDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGV 958

Query: 940  EKDKRALEIEQMQLKEAKKDLTEEFQILEGGLLARVRSVLL-------------AGGYTE 986
            EKD+RAL+IE+ +++   +D  +E  IL+  + AR+R +LL                 TE
Sbjct: 959  EKDERALQIEREEVERLARDRDDEMGILDRNIYARLRGMLLGKTAVKGPKGIRSGSEITE 1018

Query: 987  AKLGSIERKKWLEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGV 1046
              L ++ R +W    LE+E+    +E L EQY+  K   D +FE K  K+ +GDDL PGV
Sbjct: 1019 ELLETLSRGQWWMLALEDEQSAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGV 1078

Query: 1047 LKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSR 1106
            +K+VKV++AVKR++QPGDKMAGRHGNKGVISK+ P+EDMP+  +G PVD  LNPLGVPSR
Sbjct: 1079 MKMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSR 1138

Query: 1107 MNIGQILEVHLGLAAKGIGDKINQMIKEQQ---ELAKLREFLQKVYDLGDTRQRVDISEL 1163
            MN+GQILE H+G AA+G+G KI+  +++ +   +L  +RE +   Y  GD      I+++
Sbjct: 1139 MNVGQILETHMGWAARGLGIKIDDALQDYRRSGDLTPVREAMHHAY--GDDVYGEGIADM 1196

Query: 1164 SDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERP 1223
            ++ D+   A N+  G+P+ATPVFDGA E+ +   L  A    SGQ  LFDGRTG+ F RP
Sbjct: 1197 TETDLVEAAGNVTRGVPIATPVFDGAKEADVNDSLVRAGFDTSGQSILFDGRTGEQFARP 1256

Query: 1224 VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1283
            VTVG  Y+LKL+HLVDDK+HARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA
Sbjct: 1257 VTVGIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAA 1316

Query: 1284 YTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            YTLQEMLTVKSDDV GRTK+Y++IV G    E G+PESFNVL+KE+R LG+N+EL D
Sbjct: 1317 YTLQEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLD 1373