Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1343 a.a., DNA-directed RNA polymerase, beta subunit (RefSeq) from Shewanella loihica PV-4

 Score = 2151 bits (5574), Expect = 0.0
 Identities = 1070/1343 (79%), Positives = 1206/1343 (89%), Gaps = 2/1343 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSY+EKKRIRKDFG RPQVLDIPYLLSIQLDSF+KF +QDP G+ GLEAAFRSVFPI+
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            S++GNSELQYVSY+LGEPVFDVKECQIRGVTYS PLRVKLR+V++D++A  GTVKDIKEQ
Sbjct: 61   SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAPGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMG+IPLMTENGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGKVLYNARIIPYR
Sbjct: 121  EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKD L+VRIDRRRKL ASIILRAL  ++ +ILD+FFE+V +++K  +L+M 
Sbjct: 181  GSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFERVQYKIKKDSLVMA 240

Query: 241  LVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAK 299
            LV +RLRGETA++DI +A+G + VEKGRR+TARHIRQLEK     +EVPVEYI GK++A+
Sbjct: 241  LVADRLRGETASYDIKDAEGNIIVEKGRRITARHIRQLEKTNTTELEVPVEYISGKIAAQ 300

Query: 300  DYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDR 359
            DY++  TGE++++AN EISLE LA LS AG K ++ L+ N+LDHG ++S+TLR+DSTT+R
Sbjct: 301  DYIDPDTGEVLVSANAEISLEDLAKLSMAGIKDIDTLYVNELDHGAYISDTLRIDSTTNR 360

Query: 360  ISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 419
            + ALVEIYRMMRPGEPPTK+AAE+LF++LFFS ERYDLS VGRMKFN  +G +D E  G 
Sbjct: 361  LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLGIDDDEGTGI 420

Query: 420  LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479
            L + DI+ VM+K+I IRNG  EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV+ERL
Sbjct: 421  LTKEDIVAVMQKIIEIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL 480

Query: 480  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 539
            SLGDL+ +MPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
Sbjct: 481  SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 540

Query: 540  RERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVV 599
            RERAGFEVRDVH THYGRLCPIETPEGPNIGLINSL++FAR N YGFLETPYR+VV+GV+
Sbjct: 541  RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI 600

Query: 600  TDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQ 659
            TD+VDYLSAIEEG++VIAQAN ++  +G   +E +  R KGES       V YMDV+  Q
Sbjct: 601  TDQVDYLSAIEEGRYVIAQANIEVDADGRMVEEQIACRHKGESTFMRAADVQYMDVSPQQ 660

Query: 660  VVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAK 719
            ++S+AASLIPFLEHDDANRALMGANMQRQAVPTLR++KPLVGTGIER +AVDSGV   AK
Sbjct: 661  IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERTLAVDSGVVVAAK 720

Query: 720  RGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVAR 779
            RGG +  VDASRIVVKVNE+EL PGEAGIDIYNLTKYTRSNQNTCINQRPC   GEPV R
Sbjct: 721  RGGYVDYVDASRIVVKVNEDELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR 780

Query: 780  GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCV 839
            GDVLADGPSTDLG+LALGQNMRIAFMPWNGYNFEDSIL+SERV Q+DRFTTIHIQELSC+
Sbjct: 781  GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI 840

Query: 840  ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 899
            ARDTKLG+EEITADIPNVGE+ALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
Sbjct: 841  ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 900

Query: 900  KLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKD 959
            KLLRAIFGEKASDVKD+SLRVPNSV GT+IDVQVFTRDGVEKDKRA+EIE+M + +AKKD
Sbjct: 901  KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAVEIEEMHIAQAKKD 960

Query: 960  LTEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYD 1019
            LTEEF+ILE G+  R R++L+  G+ EA+L ++ R + L QT+E+E  Q +LEQLAEQ++
Sbjct: 961  LTEEFKILEEGVFGRARNLLIGAGFAEAELDALPRPQLLVQTIEDETKQTELEQLAEQHE 1020

Query: 1020 ELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079
            ELKADFDKKFE KRRKITQGDDLAPGVLKIVKVYLAVKR IQPGDKMAGRHGNKGVISKI
Sbjct: 1021 ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI 1080

Query: 1080 NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELA 1139
            NP+EDMPYDENG PVDIVLNPLGVPSRMNIGQ+LEVHLG AAKGIGD+I  M++EQ+ELA
Sbjct: 1081 NPIEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGDRITAMLEEQRELA 1140

Query: 1140 KLREFLQKVYDLG-DTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAML 1198
            +LR +++KVY+LG D +Q+VDI   +DE+V  LA NL+ G+P ATP FDGA E  IK ML
Sbjct: 1141 ELRGYIKKVYELGEDVQQQVDIDSFTDEEVLRLAKNLKGGIPTATPAFDGAKEKEIKDML 1200

Query: 1199 ELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1258
            ELA LP SGQL LFDGRTG+ FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
Sbjct: 1201 ELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL 1260

Query: 1259 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGM 1318
            GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT+MYKNIVDGNH M+PGM
Sbjct: 1261 GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM 1320

Query: 1319 PESFNVLLKEIRSLGINIELEDE 1341
            PESFNVLLKEIRSLGINIEL+ E
Sbjct: 1321 PESFNVLLKEIRSLGINIELDQE 1343