Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1361 a.a., DNA-directed RNA polymerase subunit beta from Marinobacter adhaerens HP15

 Score = 1943 bits (5033), Expect = 0.0
 Identities = 972/1359 (71%), Positives = 1145/1359 (84%), Gaps = 18/1359 (1%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQD--PEG--QYGLEAAFRSV 56
            M YSYTEKKRIRKDF   P V+D+PYLLSIQLDSF  F++ +  PE   + GL AAF+SV
Sbjct: 3    MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQMEAAPEDRRETGLHAAFKSV 62

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKD 116
            FPI SY+GN+ L+YVSYR+GEPVFDVKECQ+RGVTY+ PLRVK+RL+I+DK++    +KD
Sbjct: 63   FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDKESSNKAIKD 122

Query: 117  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
            IKEQEVYMGE+PLMTENGTFVINGTERVIVSQLHRSPGVFFD DKGKTHSSGK+LY+AR+
Sbjct: 123  IKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV 182

Query: 177  IPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQT 236
            IPYRGSWLDFEFDPKD+++VRIDRRRKLPASI+LRALG TS ++L++FFE   F +  + 
Sbjct: 183  IPYRGSWLDFEFDPKDSVFVRIDRRRKLPASILLRALGYTSEQMLEMFFETSKFSLGAEV 242

Query: 237  LMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGK 295
              +ELVP RLRG+ ATFDI + DG V VE+GRR+TARHI+QLEK G+N +EVP EY+ G+
Sbjct: 243  CKLELVPSRLRGDIATFDIKDNDGNVIVEEGRRITARHIKQLEKAGINELEVPTEYLYGR 302

Query: 296  VSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDS 355
            V AKD +++A+GE+++  N E++ E +  +  AG K +E L+TNDLD GPFMS+TLR+D 
Sbjct: 303  VLAKDMIDQASGEVLVECNSELTEELVTKILDAGVKDIETLYTNDLDCGPFMSDTLRIDP 362

Query: 356  TTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAE 415
            T   + ALVEIYRMMRPGEPPTKE+AE+LF +LFFS ERYDLS VGRMK N  + RE++ 
Sbjct: 363  TRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLRREEST 422

Query: 416  EQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV 475
             +GTL   DII+V+K LI IRNG+G VDDID+LGNRR+R VGEMAENQFRVGLVRVERAV
Sbjct: 423  GEGTLTHEDIIDVLKTLIDIRNGQGNVDDIDNLGNRRVRCVGEMAENQFRVGLVRVERAV 482

Query: 476  KERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 535
            +ERLSL + + +MPQDLINAKP++AAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP
Sbjct: 483  RERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP 542

Query: 536  GGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVV 595
            GGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ +AR N YGFLE+PYR+V 
Sbjct: 543  GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPYRKVE 602

Query: 596  NGVVTDEVDYLSAIEEGQFVIAQANAKLTEE-GGFADELVTARQKGESGLHPREHVDYMD 654
            NGVVTDEV YLSAIEE  +VIAQA+A + E+     DELVT R + E  + P E V++MD
Sbjct: 603  NGVVTDEVVYLSAIEESNYVIAQASAAMDEKTKRLTDELVTVRHQNEFTVTPPESVNFMD 662

Query: 655  VATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGV 714
            V+  QVVS+AASLIPFLEHDDANRALMGANMQRQAVPTL+++ PLVGTG+ER VA DSGV
Sbjct: 663  VSPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLKAQVPLVGTGVERTVAQDSGV 722

Query: 715  TAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPG 774
               A+RGGVI+SVDASRIVV+VN EE   G+AG+DIYNLTKYTRSNQNTCINQR  V  G
Sbjct: 723  CVSARRGGVIESVDASRIVVRVNNEETEAGDAGVDIYNLTKYTRSNQNTCINQRSIVRQG 782

Query: 775  EPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQ 834
            + +ARGDVLADGPS DLGELALGQNMRIAFMPWNGYNFEDSIL+SE+VVQ+DR TTIHIQ
Sbjct: 783  DIIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTIHIQ 842

Query: 835  ELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQ 894
            EL+CVARDTKLG+EEITADIPNVGE+ALSKLDESGIVYIGAEV  GDILVGKVTPKGETQ
Sbjct: 843  ELTCVARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVGPGDILVGKVTPKGETQ 902

Query: 895  LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLK 954
            LTPEEKLLRAIFGEKASDVKDTS RVP    GTVIDVQVFTRDG+EKD+RA  IE+ QL 
Sbjct: 903  LTPEEKLLRAIFGEKASDVKDTSSRVPTGTRGTVIDVQVFTRDGIEKDQRAQSIEKEQLD 962

Query: 955  EAKKDLTEEFQILEGGLLARVRSVL----------LAGGYT--EAKLGSIERKKWLEQTL 1002
            + +KDL +E++I+EG    R+ S L          L  G T  E+ L  + R  W +  +
Sbjct: 963  QYRKDLKDEYRIVEGATFERLNSALKGQEVISGPGLKKGATLEESYLAELPRSDWFKLRM 1022

Query: 1003 ENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP 1062
            ++E L   LE+  +  ++ K + + +F+ K+ K+ QGDDLAPGVLKIVKVYLA+KRRIQP
Sbjct: 1023 KDESLNELLEKSEQGLEDRKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKRRIQP 1082

Query: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAK 1122
            GDKMAGRHGNKGVIS + P+EDMPYDE+G  VD+VLNPLGVPSRMN+GQ+LE HLG AAK
Sbjct: 1083 GDKMAGRHGNKGVISSVMPIEDMPYDEHGNTVDVVLNPLGVPSRMNVGQVLETHLGAAAK 1142

Query: 1123 GIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182
            G+G++I+QM+ EQ+++A+LR+ L ++Y+  D   +VD+  LSD+++  + HNLR G+P+A
Sbjct: 1143 GLGERISQMLDEQRKVAELRKLLDEIYNHSDEVFKVDLDSLSDKEILEMCHNLRGGVPMA 1202

Query: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242
            TPVFDGA E+ +K MLELA L  +GQ  L+DGRTGD F+RPVTVGYMY+LKLNHL+DDKM
Sbjct: 1203 TPVFDGAKEAEVKRMLELAGLSTTGQTMLYDGRTGDMFDRPVTVGYMYILKLNHLIDDKM 1262

Query: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1302
            HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK
Sbjct: 1263 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTK 1322

Query: 1303 MYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELEDE 1341
            MYKNIVDG+H MEPGMPESFNVL+KEIRSLGI+IELE E
Sbjct: 1323 MYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE 1361