Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1345 a.a., DNA-directed RNA polymerase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 2146 bits (5561), Expect = 0.0
 Identities = 1074/1345 (79%), Positives = 1207/1345 (89%), Gaps = 4/1345 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSY+EKKRIRKDFG RPQVLDIPYLLSIQLDSF+KF +QDP G+ GLEAAFRSVFPI+
Sbjct: 1    MVYSYSEKKRIRKDFGKRPQVLDIPYLLSIQLDSFKKFTDQDPTGERGLEAAFRSVFPIK 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            S++GNSELQYVSY+LGEPVFDVKECQIRGVTYS PLRVKLR+V++D++A AGTVKDIKEQ
Sbjct: 61   SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMG+IPLMT+NGTFVINGTERVIVSQLHRSPGVFFD D+GKTHSSGKVLYNARIIPYR
Sbjct: 121  EVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKD L+VRIDRRRKLPA+IILRAL  ++ EILD+FFE+V F++K  TL+M 
Sbjct: 181  GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDLFFERVEFKIKKDTLVMT 240

Query: 241  LVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAK 299
            LVPERLRGETA++DI +A+G V VE GRRVTARHIRQLEK     +EVPVEYIVGK +A+
Sbjct: 241  LVPERLRGETASYDIKDAEGTVLVEAGRRVTARHIRQLEKTNTTELEVPVEYIVGKYAAQ 300

Query: 300  DYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDR 359
            DY++  TGE++++AN EISLE LA LS AG K+L  L+ N+LDHG ++S+TLR+D TT+R
Sbjct: 301  DYIDPDTGEVLVSANSEISLEDLAKLSLAGIKELSTLYINELDHGAYISDTLRIDPTTNR 360

Query: 360  ISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGT 419
            + ALVEIYRMMRPGEPPTK+AAE+LF++LFFS ERYDLS VGRMKFN  +   D E  G 
Sbjct: 361  LEALVEIYRMMRPGEPPTKDAAEALFQNLFFSEERYDLSKVGRMKFNRRLSIPDDEGSGV 420

Query: 420  LDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL 479
            L + DI+ VMK +I IRNG  EVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV+ERL
Sbjct: 421  LSKEDIVAVMKNIIHIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL 480

Query: 480  SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 539
            SLGDL+ +MPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
Sbjct: 481  SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT 540

Query: 540  RERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVV 599
            RERAGFEVRDVH THYGRLCPIETPEGPNIGLINSL++FAR N YGFLETPYR+VV+GV+
Sbjct: 541  RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNSYGFLETPYRKVVDGVI 600

Query: 600  TDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQ 659
            TDEV+YLSAIEEG++VIAQAN ++  EG   +E +  R KGES       + YMDV+  Q
Sbjct: 601  TDEVEYLSAIEEGRYVIAQANIEVDSEGRMVEEQIACRHKGESTFMRASDIQYMDVSPQQ 660

Query: 660  VVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAK 719
            ++S+AASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIER +AVDSGV   AK
Sbjct: 661  IISVAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERTLAVDSGVVVAAK 720

Query: 720  RGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVAR 779
            RGGVI  VDASRIVVKVNE+EL PGEAGIDIYNLTKYTRSNQNTCINQRPC   GEPV R
Sbjct: 721  RGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGEPVVR 780

Query: 780  GDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCV 839
            GDVLADGPSTDLG+LALGQNMRIAFMPWNGYNFEDSIL+SERV Q+DRFTTIHIQELSC+
Sbjct: 781  GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI 840

Query: 840  ARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 899
            ARDTKLG+EEITADIPNVGE+ALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
Sbjct: 841  ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE 900

Query: 900  KLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKD 959
            KLLRAIFGEKASDVKD+SLRVPNSV GT+IDVQVFTRDGVEKDKRA+EIE+M + +A+KD
Sbjct: 901  KLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVEKDKRAIEIEEMHIAQARKD 960

Query: 960  LTEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYD 1019
            L EEF+ILE G+L+R R++LL+ G++EA++ ++ RK  L Q +++E  Q +LEQLAEQ++
Sbjct: 961  LGEEFKILEEGVLSRARNLLLSAGFSEAQIAALPRKDVLVQVIDDEAKQTELEQLAEQHE 1020

Query: 1020 ELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKI 1079
            ELKADFDKKFE KRRKITQGDDLAPGVLKIVKVYLAVKR IQPGDKMAGRHGNKGVISKI
Sbjct: 1021 ELKADFDKKFEIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI 1080

Query: 1080 NPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQE-- 1137
            NP+EDMPYDE G PVDIVLNPLGVPSRMNIGQ+LEVHLG AAKGIG KI  M+++Q+E  
Sbjct: 1081 NPIEDMPYDEQGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGHKIAAMLEDQREKG 1140

Query: 1138 LAKLREFLQKVYDLGD-TRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKA 1196
            LA++R ++++VY+LGD  +QRVDI   +D+++  LA+NL+ G+PVATP FDGA E  IK 
Sbjct: 1141 LAEVRNYIKQVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQ 1200

Query: 1197 MLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1256
            MLELA LP SGQL LFDGRTG+ FERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ
Sbjct: 1201 MLELAGLPTSGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQ 1260

Query: 1257 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEP 1316
            PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRT+MYKNIVDGNH M+P
Sbjct: 1261 PLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQP 1320

Query: 1317 GMPESFNVLLKEIRSLGINIELEDE 1341
            GMPESFNVLLKEIRSLGINIEL+ E
Sbjct: 1321 GMPESFNVLLKEIRSLGINIELDQE 1345