Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Klebsiella michiganensis M5al

 Score = 2278 bits (5902), Expect = 0.0
 Identities = 1134/1342 (84%), Positives = 1239/1342 (92%), Gaps = 1/1342 (0%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQYGLEAAFRSVFPIQ 60
            MVYSYTEKKRIRKDFG RPQVLDIPYLLSIQLDSF+KFIEQDPEGQYGLEAAFRSVFPI+
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK 60

Query: 61   SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQ 120
            SY+GNSELQYVSYRLGEPVFDVKECQIRGVTYS PLRVKLRLVI++++AP GTVKDIKEQ
Sbjct: 61   SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ 120

Query: 121  EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180
            EVYMGEIPLMT+NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
Sbjct: 121  EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR 180

Query: 181  GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQTLMME 240
            GSWLDFEFDPKDNL+VRIDRRRKLPA+IILRAL  T+ +ILD+FFEKV FE++D  L ME
Sbjct: 181  GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME 240

Query: 241  LVPERLRGETATFDIEADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVGKVSAKD 300
            LVPERLRGETA+FDIEA+GKVYVEKGRR+TARHIRQLEKD +  IEVPVEYI GKV++KD
Sbjct: 241  LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVASKD 300

Query: 301  YVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVDSTTDRI 360
            YV+E+TGELI  AN E+SL+ LA LSQ+G+K++E LFTNDLDHGP+MSET+RVD T DR+
Sbjct: 301  YVDESTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTNDRL 360

Query: 361  SALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDAEEQGTL 420
            SALVEIYRMMRPGEPPT+EAAESLFE+LFFS +RYDLS VGRMKFN S+ R++ E  G L
Sbjct: 361  SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL 420

Query: 421  DEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480
             + DIIEVMKKLI IRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
Sbjct: 421  SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS 480

Query: 481  LGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR 540
            LGDLD +MPQD+INAKPISAAVKEFFGSSQLSQFMDQNNPLSE+THKRRISALGPGGLTR
Sbjct: 481  LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540

Query: 541  ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRVVNGVVT 600
            ERAGFEVRDVH THYGR+CPIETPEGPNIGLINSLS +A+ NEYGFLETPYR+V +G+VT
Sbjct: 541  ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGIVT 600

Query: 601  DEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMDVATNQV 660
            DE+ YLSAIEEG +VIAQAN+ L +EG F ++LVT R KGES L  R+ VDYMDV+T QV
Sbjct: 601  DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV 660

Query: 661  VSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGVTAVAKR 720
            VS+ ASLIPFLEHDDANRALMGANMQRQAVPTLR++KPLVGTG+ER VAVDSGVTAVAKR
Sbjct: 661  VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR 720

Query: 721  GGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPGEPVARG 780
            GG +Q VDASRIV+KVNE+E+ PGEAGIDIYNLTKYTRSNQNTCINQ PCV  GEP+ RG
Sbjct: 721  GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG 780

Query: 781  DVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVA 840
            DVLADGPSTDLGELALGQNMR+AFMPWNGYNFEDSILVSERVVQ+DRFTTIHIQEL+CV+
Sbjct: 781  DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS 840

Query: 841  RDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK 900
            RDTKLG EEITADIPNVGEAALSKLDESGIVYIGAEV GGDILVGKVTPKGETQLTPEEK
Sbjct: 841  RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK 900

Query: 901  LLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL 960
            LLRAIFGEKASDVKD+SLRVPN V+GT+IDVQVFTRDGVEKDKRALEIE+MQLK+AKKDL
Sbjct: 901  LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL 960

Query: 961  TEEFQILEGGLLARVRSVLLAGGYTEAKLGSIERKKWLEQTLENEELQNQLEQLAEQYDE 1020
            +EE QILE GL  R+ +VL++GG    KL  + R +WLE  L +EE QNQLEQLAEQYDE
Sbjct: 961  SEELQILEAGLFGRIYAVLVSGGIEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE 1020

Query: 1021 LKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN 1080
            LK +F+KK EAKRRKITQGDDLAPGVLKIVKVYLAVKR+IQPGDKMAGRHGNKGVISKIN
Sbjct: 1021 LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN 1080

Query: 1081 PVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGDKINQMIKEQQELAK 1140
            P+EDMPYDENG PVDIVLNPLGVPSRMNIGQILE HLG+AAKGIG+KIN M+K+QQE+AK
Sbjct: 1081 PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQQEVAK 1140

Query: 1141 LREFLQKVYDLG-DTRQRVDISELSDEDVRTLAHNLRAGLPVATPVFDGAPESSIKAMLE 1199
            LREF+Q+ YDLG D RQ+VD++  +DE+V  LA NL+ G+P+ATPVFDGA ES IK +L+
Sbjct: 1141 LREFIQRAYDLGTDVRQKVDLNTFTDEEVMRLAENLKKGMPIATPVFDGAKESEIKELLQ 1200

Query: 1200 LADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1259
            L  LP SGQ+TLFDGRTG+ FER VTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
Sbjct: 1201 LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG 1260

Query: 1260 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHAMEPGMP 1319
            GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNH MEPGMP
Sbjct: 1261 GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP 1320

Query: 1320 ESFNVLLKEIRSLGINIELEDE 1341
            ESFNVLLKEIRSLGINIELEDE
Sbjct: 1321 ESFNVLLKEIRSLGINIELEDE 1342