Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1356 a.a., DNA-directed RNA polymerase beta chain from Caulobacter crescentus NA1000

 Score = 1557 bits (4032), Expect = 0.0
 Identities = 793/1364 (58%), Positives = 1027/1364 (75%), Gaps = 33/1364 (2%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEG----QYGLEAAFRSV 56
            M  S+T KKRIRK FG  P+ + +P L+ +Q  S+E+F++++         G+EA F+SV
Sbjct: 1    MAQSFTGKKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRETRPGLRRDEGVEAVFKSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG--TV 114
            FPI+ +N  + L+YVSY   EP +DV+EC  R +T++ PL+VKLRL++F+ +   G  +V
Sbjct: 61   FPIKDFNERAVLEYVSYEFEEPKYDVEECIQRDMTFAAPLKVKLRLIVFETEEETGARSV 120

Query: 115  KDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNA 174
            KDIKEQ+VYMG+IPLMT+ GTF++NGTERVIVSQ+HRSPGVFFD DKGKTH+SGK+L+ A
Sbjct: 121  KDIKEQDVYMGDIPLMTDKGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHASGKLLFAA 180

Query: 175  RIIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKD 234
            R+IPYRGSWLDFEFD KD +YVRIDRRRKLPA+  L ALG    EIL  F++ V FE + 
Sbjct: 181  RVIPYRGSWLDFEFDAKDIVYVRIDRRRKLPATTFLYALGMDGEEILTTFYDVVPFEKRS 240

Query: 235  QTLMMELVPERLRGETATFD-IEAD-GKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYI 292
                    PER RG    F  ++AD G+     G ++TAR  ++    G+  + +  E +
Sbjct: 241  GGWATPYKPERWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEAL 300

Query: 293  VGKVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDH---GPFMSE 349
             G+  A+D VN ATGE+   A  E+ + ++  L+  G+  ++VL   D+DH   G +M  
Sbjct: 301  TGRYLARDAVNMATGEIYAEAGDELDVTSIQALADQGFSTIDVL---DIDHVTVGAYMRN 357

Query: 350  TLRVDSTTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSI 409
            TLRVD    R  AL +IYR+MRPGEPPT EAAE++F+SLFF AERYDLS+VGR+K N  +
Sbjct: 358  TLRVDKNAIREDALFDIYRVMRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRL 417

Query: 410  GREDAEEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV 469
             ++ ++E   L + D++ V+K L+ +R+G+GE+DDID+LGNRR+RSVGE+ ENQ+RVGL+
Sbjct: 418  EQDVSDEVRILRKEDVLAVLKVLVGLRDGRGEIDDIDNLGNRRVRSVGELLENQYRVGLL 477

Query: 470  RVERAVKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRR 529
            R+ERA+KER+S  D+D VMP DLINAKP +AAV+EFFGSSQLSQFMDQ NPLSE+THKRR
Sbjct: 478  RMERAIKERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRR 537

Query: 530  ISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLET 589
            +SALGPGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+  AR N+YGF+E+
Sbjct: 538  LSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIES 597

Query: 590  PYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREH 649
            PYRRV +G   DEV Y+SA+EE + VIAQ+N K+  EG   ++LV  R  GE  L  +E 
Sbjct: 598  PYRRVKDGKPQDEVVYMSAMEESKHVIAQSNIKVA-EGEIVEDLVPGRINGEPTLLQKET 656

Query: 650  VDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVA 709
            VD MDV+  QVVS+AA+LIPFLE+DDANRALMG+NMQRQAVP ++S+ PLVGTG+E  VA
Sbjct: 657  VDLMDVSPRQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQSDAPLVGTGMEAVVA 716

Query: 710  VDSGVTAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRP 769
             DSG   +AKR GV++ +D +RIV++   EE  P  +G+DIY ++K+ RSNQ+TCINQRP
Sbjct: 717  RDSGAVVIAKRTGVVEQIDGTRIVIRAT-EETDPARSGVDIYRMSKFQRSNQSTCINQRP 775

Query: 770  CVMPGEPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFT 829
             V  G+ +  GD++ADGPST+LGELALG+N  +AFMPWNGYNFEDSIL+SER+V+DD FT
Sbjct: 776  LVKVGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFT 835

Query: 830  TIHIQELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTP 889
            +IHI+E   +ARDTKLG EEIT DIPNVGE AL  LDE+GIV IGAEV+ GDILVGKVTP
Sbjct: 836  SIHIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTP 895

Query: 890  KGETQLTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIE 949
            KGE+ +TPEEKLLRAIFGEKASDV+DTSLR+P  VAGT++DV+VF R GV+KD+RAL IE
Sbjct: 896  KGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIE 955

Query: 950  QMQLKEAKKDLTEEFQILEGGLLARVRSVLLA------------GGYTEAKLGSIERKKW 997
            + ++    KD  +EF IL   +  R++ +L+             G  T   L  +    W
Sbjct: 956  RAEIDRLGKDRDDEFAILNRNISGRLKELLIGKVALSGPKGLSRGEITAEGLAQVASGLW 1015

Query: 998  LEQTLENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVK 1057
             +  LE+E+   +LE L   +DE +   D++FE K  K+ +GD+L PGV+K+VKV++AVK
Sbjct: 1016 WQIALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVK 1075

Query: 1058 RRIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHL 1117
            R++QPGDKMAGRHGNKGVIS+I P+EDMP+  +G  VD+VLNPLGVPSRMN+GQI E HL
Sbjct: 1076 RKLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHL 1135

Query: 1118 GLAAKGIGDKINQMIKEQQELAKLREFLQKVYDL-GDTRQRVDISELSDEDVRTLAHNLR 1176
            G A   +G +I  ++++ Q+  + +  ++++ ++ G   +  D    ++E +  LA NL 
Sbjct: 1136 GWACANLGKQITNLLEDWQQGGQKQALVERLTEIYGPDEELPD----TEEGLVELARNLG 1191

Query: 1177 AGLPVATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNH 1236
             G+P+ATPVFDGA    I+  LE+A +  SGQ  LFDG TG+ F+RPVTVGY+YMLKL+H
Sbjct: 1192 KGVPIATPVFDGARMDDIEGHLEMAGVNKSGQSILFDGLTGEQFKRPVTVGYIYMLKLHH 1251

Query: 1237 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1296
            LVDDK+HARS G YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD
Sbjct: 1252 LVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDD 1311

Query: 1297 VNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELED 1340
            V GRTK+Y++IV G+   E G+PESFNVL+KE+RSLG+N+ELE+
Sbjct: 1312 VAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELEN 1355