Pairwise Alignments

Query, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

Subject, 1368 a.a., DNA-directed RNA polymerase subunit beta from Burkholderia phytofirmans PsJN

 Score = 1750 bits (4533), Expect = 0.0
 Identities = 879/1368 (64%), Positives = 1085/1368 (79%), Gaps = 31/1368 (2%)

Query: 1    MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFEKFIEQDPEGQY----GLEAAFRSV 56
            M YS+TEKKRIRK F  RP V  +P+LL+ QL+SF  F++ D         GL+AAF SV
Sbjct: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60

Query: 57   FPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVIFDKDAPAG-TVK 115
            FPI S+NG + L++VSY L  P F++KECQ RG+TY   LR K+RLV+ DK++P+   VK
Sbjct: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK 120

Query: 116  DIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175
            ++KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR
Sbjct: 121  EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 180

Query: 176  IIPYRGSWLDFEFDPKDNLYVRIDRRRKLPASIILRALGKTSAEILDIFFEKVNFEVKDQ 235
            IIPYRGSWLDFEFDPKD LY R+DRRRK+P +I+L+A+G T  +IL  FF   NF +  +
Sbjct: 181  IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE 240

Query: 236  TLMMELVPERLRGETATFDI-EADGKVYVEKGRRVTARHIRQLEKDGVNFIEVPVEYIVG 294
               ME VPERLRGE A FDI + DG V V+K +R+ A+HIR L+     FI VP +Y++G
Sbjct: 241  GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG 300

Query: 295  KVSAKDYVNEATGELIITANQEISLEALANLSQAGYKKLEVLFTNDLDHGPFMSETLRVD 354
            +V AK+ V+  TGE+I  AN EI+   L  L ++  K ++ L+TNDLD GP++S TLR+D
Sbjct: 301  RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID 360

Query: 355  STTDRISALVEIYRMMRPGEPPTKEAAESLFESLFFSAERYDLSTVGRMKFNSSIGREDA 414
             T D+++A + IYRMMRPGEPPT+EA E+LF  LF+S + YDLS VGRMKFN  +GR++ 
Sbjct: 361  ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 420

Query: 415  EEQGTLDEVDIIEVMKKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474
                TL + DI+  +K L+ +RNGKGEVDDIDHLGNRR+R VGE+AENQFR GLVRVERA
Sbjct: 421  VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480

Query: 475  VKERLSLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALG 534
            VKERL   + +N+MP DLIN+KPIS+A++EFFGSSQLSQFMDQ NPLSE+THKRR+SALG
Sbjct: 481  VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540

Query: 535  PGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNEYGFLETPYRRV 594
            PGGLTRERAGFEVRDVH THYGR+CPIETPEGPNIGLINSL+ +A  NEYGFLETPYR+V
Sbjct: 541  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 600

Query: 595  VNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADELVTARQKGESGLHPREHVDYMD 654
            V+  VTD++DYLSAIEEG++VIAQANA + E+G   DELV++R+ GE+ +   + + YMD
Sbjct: 601  VDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGSLTDELVSSREAGETLMVTPDRIQYMD 660

Query: 655  VATNQVVSIAASLIPFLEHDDANRALMGANMQRQAVPTLRSEKPLVGTGIERNVAVDSGV 714
            VA +Q+VS+AASLIPFLEHDDANRALMG+NMQRQAVP LR EK +VGTGIER VAVDSG 
Sbjct: 661  VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT 720

Query: 715  TAVAKRGGVIQSVDASRIVVKVNEEELIPGEAGIDIYNLTKYTRSNQNTCINQRPCVMPG 774
            T  A RGGV+  VDA R+V++VN++E   GE G+DIYNL KYTRSNQNT INQRP V  G
Sbjct: 721  TVQAFRGGVVDYVDAGRMVIRVNDDEAAAGETGVDIYNLIKYTRSNQNTNINQRPIVKVG 780

Query: 775  EPVARGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQ 834
            + V+RGDVLADG STDLGELALGQNM +AFMPWNGYNFEDSIL+SE+VV DDR+T+IHI+
Sbjct: 781  DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840

Query: 835  ELSCVARDTKLGAEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQ 894
            EL+ VARDTKLG EEIT DI N+ E  L +LDESGIVYIGAEV+ GD+LVGKVTPKGETQ
Sbjct: 841  ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 900

Query: 895  LTPEEKLLRAIFGEKASDVKDTSLRVPNSVAGTVIDVQVFTRDGVEKDKRALEIEQMQLK 954
            LTPEEKLLRAIFGEKASDVKDTSLRVP+ ++GTVIDVQVFTR+G+++DKRA +I   +LK
Sbjct: 901  LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 960

Query: 955  EAKKDLTEEFQILEGGLLARVRSVL-----------LAGG--YTEAKLGSIERKKWLEQT 1001
              + DL ++ +I+EG    R+  +L           LA G    +A L  ++   W +  
Sbjct: 961  RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR 1020

Query: 1002 LENEELQNQLEQLAEQYDELKADFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061
            L +EE   QLE + +  ++ +  FD  FE KR+K+TQGD+L PGVLK+VKVYLAVKRR+Q
Sbjct: 1021 LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 1080

Query: 1062 PGDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAA 1121
            PGDKMAGRHGNKGV+SKI P+EDMPY  +G+P D+VLNPLGVPSRMN+GQ+LEVHLG AA
Sbjct: 1081 PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140

Query: 1122 KGIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPV 1181
            KG+G +I +M++ Q ++A+LREFL K+Y+  ++ +  ++   +D+++  LA NLR G+P 
Sbjct: 1141 KGLGWRIGEMLQRQAKIAELREFLTKIYN--ESGRAEELDSFTDDEIVELAKNLREGVPF 1198

Query: 1182 ATPVFDGAPESSIKAMLELA---DL-------PASGQLTLFDGRTGDAFERPVTVGYMYM 1231
            ATPVFDGA E  +   L+LA   D+       P+  Q+ L+DGRTG+ FER VTVGYM+ 
Sbjct: 1199 ATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHY 1258

Query: 1232 LKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT 1291
            LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLT
Sbjct: 1259 LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT 1318

Query: 1292 VKSDDVNGRTKMYKNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339
            VKSDDV GRTK+Y+N+V G+H ++ GMPESFNVL+KEIRSLGI+I+L+
Sbjct: 1319 VKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLD 1366