Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 169 a.a., transcriptional activator RfaH from Pseudomonas stutzeri RCH2

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 20/159 (12%)

Query: 1   MSEAPKKRWYVVQAFSGFEGRVAQSL-REHIKMHGMEELFGEVLVPTEEVVEMRAGQRRK 59
           M+ +   RWY++Q     E R  + L R+H + +           P +     R     +
Sbjct: 1   MTPSNTARWYLIQTKPRQEARAEEHLLRQHFECYR----------PVKASSPSRGSPIAR 50

Query: 60  SERKFFPGYVLVQMIMNDESWHLVRS---VPRVMGFIGGTSDRPAPITDKEADAILNRLE 116
           +    FPGY+ +++    ++W+ +RS   V RV+ F G    +P P+ D+    +  RL 
Sbjct: 51  TGEALFPGYLFIRLDCIHDNWYPIRSTRGVSRVVSFGG----QPTPVRDELIAQLRQRLA 106

Query: 117 KASEAPRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEK 155
           + SE+ R  T F  G+ V V+ G F++        D E+
Sbjct: 107 Q-SESGRTAT-FNPGDRVHVSGGSFSEIEAIFVSSDGEE 143