Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 170 a.a., Transcriptional activator RfaH from Pseudomonas syringae pv. syringae B728a

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 42/178 (23%), Positives = 72/178 (40%), Gaps = 22/178 (12%)

Query: 8   RWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFPG 67
           RWY++Q     E R  + LR         E +  +    +     + G R ++    FPG
Sbjct: 9   RWYLIQTKPRQEARAEEHLRRQ-----QFECYRPLQADAK-----KTGTRVQAGEPLFPG 58

Query: 68  YVLVQMIMNDESWHLVRS---VPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRP 124
           Y+ + M    ++W+ +RS   V R++ F G     P P+ D   + I  RL      P P
Sbjct: 59  YLFIHMDQVQDNWYPIRSTRGVSRIVTFGG----HPVPVRDHLIEQIRQRL----ATPAP 110

Query: 125 KTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKLD 182
           KT F  G+ V +    + D        D    R  + +++  R   V L    + +++
Sbjct: 111 KTQFAQGDAVLITHASWGDVEAIFLSKD-GTQRAVILLNMLQRQQKVVLPISSLSRIE 167