Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., transcriptional activator rfaH, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 19/179 (10%)

Query: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTE-EVVEMRAGQRRKSERKFF 65
           K WY++      E R  Q+L        M+ L  E  +P   + V+   G    SE   F
Sbjct: 2   KAWYLIYCKPRNEMRAQQNL-------SMQNL--ETYLPKHRKQVKASGGAVSVSESVLF 52

Query: 66  PGYVLVQM---IMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAP 122
           P Y+ VQ    + +  S H  R V R++G     S++  PI D    A L R E   E  
Sbjct: 53  PNYLFVQFDPEVTSVRSIHATRGVSRIVG----CSEQMTPIDDALIRA-LKRKELQVEKL 107

Query: 123 RPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
             +    AGE V+   GPF+D      E D  K R +V     G+   +++E   + ++
Sbjct: 108 ACEKPLAAGERVKFCAGPFSDLEAIFLESDGNK-RCQVLFEFMGQQKQLDVESSSIVRI 165