Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

 Score =  303 bits (775), Expect = 1e-87
 Identities = 148/180 (82%), Positives = 165/180 (91%), Gaps = 1/180 (0%)

Query: 1   MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKS 60
           M+EA KKRWYVVQAFSG+EGRV +SL EHIKMHGME  FGEVLVPTEEVVEMRAGQRRKS
Sbjct: 1   MTEA-KKRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKS 59

Query: 61  ERKFFPGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASE 120
           ERKFFPGYVLVQM MNDESWHLV+S+PRVMGFIGGTSDRPAPI+D+EADAIL RL++ +E
Sbjct: 60  ERKFFPGYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAILQRLQETTE 119

Query: 121 APRPKTMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180
           +P  + MFE GEVVRV DGPFADFNGTVEEVDYEK+R+KVSV IFGR+TPVEL+F Q+EK
Sbjct: 120 SPTHRVMFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQIEK 179