Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., transcriptional activator rfaH, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
           K WY++      E R  Q+L        ++ L  E  +P     + + GQ+R      FP
Sbjct: 2   KAWYLLYCKPRSEVRAQQNL-------ALQNL--ETYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAI-LNRLEKASEAPRPK 125
            Y+ +    +  S   V S  R +  I    ++  PI D+   AI +  L  +       
Sbjct: 53  NYLFINFDPSQTSVKQVHST-RGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTP 111

Query: 126 TMFEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
              + GE +R  DGPFAD     +E    K R  V  +I G+   + +    VE++
Sbjct: 112 LELKTGEKIRFKDGPFADLEAIFQEKCPNK-RCHVLFNIMGQINILTVPEQSVERV 166