Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., transcription anti-termination protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  146 bits (369), Expect = 2e-40
 Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 2/176 (1%)

Query: 6   KKRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFF 65
           +K+WYV++A SG E +V + L   +K   + E   +VL+PTE+V ++R G++   ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 66  PGYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPK 125
           PGYVLV+  +  E  H +R+ P V+GF+GG S++P P+   E + IL  +++  E     
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGG-SEKPVPLRQSEVNRILGTVDELQETGEEL 123

Query: 126 TM-FEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEK 180
            + +  GE V+V  GPF+ F+G +EEV+ EK +LKV V IFGR TP+EL F QVEK
Sbjct: 124 NIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179