Pairwise Alignments

Query, 182 a.a., transcription termination/antitermination protein NusG from Vibrio cholerae E7946 ATCC 55056

Subject, 166 a.a., transcription antitermination protein nusG (RefSeq) from Shewanella sp. ANA-3

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 7   KRWYVVQAFSGFEGRVAQSLREHIKMHGMEELFGEVLVPTEEVVEMRAGQRRKSERKFFP 66
           K WY++      E R  Q+L        ++ L  E  +P     + + GQ+R      FP
Sbjct: 2   KAWYLLYCKPRSEARAQQNL-------ALQNL--ETYLPMVSEEKSQRGQKRICRVPLFP 52

Query: 67  GYVLVQMIMNDESWHLVRSVPRVMGFIGGTSDRPAPITDKEADAILNRLEKASEAPRPKT 126
            Y+ +    +  S   V S  R +  I    ++  PI D+   AI  +    S+A     
Sbjct: 53  NYLFINFDPSQTSVKQVNST-RGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQAVLDHE 111

Query: 127 M-FEAGEVVRVNDGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFGQVEKL 181
           +  + GE +R  DGPF D  G  +E    K R  V  +I G++  V +    V +L
Sbjct: 112 LELKTGEKIRFKDGPFVDLEGIFQEKCPNK-RCHVLFNIMGQSKVVTVPQDSVVRL 166