Pairwise Alignments

Query, 613 a.a., 4-hydroxy-3-polyprenylbenzoate decarboxylase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., conserved hypothetical protein TIGR00148 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  702 bits (1813), Expect = 0.0
 Identities = 325/459 (70%), Positives = 385/459 (83%)

Query: 1   MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVL 60
           M+FKDLR F+D+LE  GELKRI++P+DPH EMTEI+DR LRA+GPALLFENP  +  PVL
Sbjct: 1   MSFKDLRSFIDHLEANGELKRISYPVDPHLEMTEIADRVLRAQGPALLFENPTNHSMPVL 60

Query: 61  TNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVK 120
            NLFGTP+RVAM +G+     LR+VG+ LA+LKEPEPPRG K+ I K+P+FKQ LNMP K
Sbjct: 61  ANLFGTPKRVAMALGKDDPLALREVGELLAFLKEPEPPRGFKDAISKIPMFKQALNMPPK 120

Query: 121 RLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGLTITRGPHKKRQNLGIYRQQK 180
            +R   CQ++V  GD VDL ++P+  CWP DVAPL+TWGLTIT+GP K RQNLGIYRQQ 
Sbjct: 121 TVRNPACQQVVKTGDDVDLTQLPIQHCWPGDVAPLVTWGLTITKGPRKSRQNLGIYRQQL 180

Query: 181 IARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA 240
           + +NK+IMRWL+HRGGALD  D+ E+ PGE +PV VA G+DP TILGAVTPVPD +SEYA
Sbjct: 181 LGKNKLIMRWLSHRGGALDFADFKEQFPGERYPVVVALGSDPVTILGAVTPVPDAMSEYA 240

Query: 241 FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHV 300
           FAGLLRG RTEV K++S DLEVPAS+EI+LEGYIDPNE A+EGPYGDHTGYYNE ++  V
Sbjct: 241 FAGLLRGERTEVCKALSCDLEVPASSEIILEGYIDPNEMAEEGPYGDHTGYYNETDKFPV 300

Query: 301 FTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSY 360
           FTVTH+T R  PIYHSTYTGRPPDEPA+LGVALNEVFVPIL+KQ+PEI DFYLPPEGCSY
Sbjct: 301 FTVTHITHRKDPIYHSTYTGRPPDEPAMLGVALNEVFVPILRKQYPEIIDFYLPPEGCSY 360

Query: 361 RMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDEQVNARDWPQVIAAMVNHMSP 420
           RMA+++++KQYPGHAKRVM+G WSFLRQFMYTKF++V D+ VN RDW  VI A+   M P
Sbjct: 361 RMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDDVNCRDWNDVIWAITTRMDP 420

Query: 421 LRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAE 459
            RDT+ I++TPID LDFASPVVGLGSK+GLDAT KW  E
Sbjct: 421 KRDTVMIDNTPIDYLDFASPVVGLGSKMGLDATNKWEGE 459



 Score =  113 bits (282), Expect = 2e-29
 Identities = 60/141 (42%), Positives = 82/141 (58%), Gaps = 16/141 (11%)

Query: 488 DVLDVALP-EAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHD 546
           +++D  LP E  + ++ ++ I KQ  G A++++      L      KF+++ DDDVN  D
Sbjct: 347 EIIDFYLPPEGCSYRMAVISIRKQYPGHAKRVMMGAWSFLRQFMYTKFIVVVDDDVNCRD 406

Query: 547 WNDVIWAMTTRMDPARDSLRIVGQDL---------------ICFDATNKLPDEVEREWGT 591
           WNDVIWA+TTRMDP RD++ I    +               +  DATNK   E  REWGT
Sbjct: 407 WNDVIWAITTRMDPKRDTVMIDNTPIDYLDFASPVVGLGSKMGLDATNKWEGETNREWGT 466

Query: 592 PIRKDPKLVAKIDSLWDELGI 612
           PI  DPK+  KIDS+WDELGI
Sbjct: 467 PIVMDPKVKQKIDSIWDELGI 487