Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 419 a.a., transcription termination factor Rho from Pseudomonas stutzeri RCH2

 Score =  684 bits (1765), Expect = 0.0
 Identities = 337/419 (80%), Positives = 389/419 (92%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNLTELK  P+++L+++ E +G++N+AR RKQD+IF++LK HAKSGE+I GDGVLEILQD
Sbjct: 1   MNLTELKQKPITELLEMAEQMGIDNMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGD+I GKIRPPKEGERYFALLKV+++N
Sbjct: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIIGKIRPPKEGERYFALLKVDSIN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            DRP+NA+NKILFENLTPL ANER+ ME GNGSTED+T RV+DL APIGKGQRGLIVAPP
Sbjct: 121 YDRPENAKNKILFENLTPLFANERLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT++LQNIA +I  N+PEC L+VLLIDERPEEVTEMQR V+GEVVASTFDEP +RHV
Sbjct: 181 KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL +PKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSLTI+ATALV+TGSKMDEVIYEEFKGTGN+EL L+R+IAEKRVFPAI+ 
Sbjct: 301 FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNLELQLDRRIAEKRVFPAINI 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
           NRSGTRREELLT  +ELQ++WILRK++HPM E+ A+EFL+DKL  TKTNDEFF +M+R+
Sbjct: 361 NRSGTRREELLTSEEELQRIWILRKLLHPMDESAAIEFLLDKLKDTKTNDEFFMSMKRK 419