Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., transcription termination factor Rho (RefSeq) from Shewanella amazonensis SB2B

 Score =  723 bits (1865), Expect = 0.0
 Identities = 367/418 (87%), Positives = 391/418 (93%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNL ELKN  ++DLV L ES+ LEN+AR RKQDIIF+ILKAHAKSGEDIFG GVLEILQD
Sbjct: 1   MNLNELKNMSIADLVALAESMNLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSAD SYLAGPDDIYVSPSQ+RRFNLRTGD+IAGKIRPPKEGERYFALLKVN VN
Sbjct: 61  GFGFLRSADGSYLAGPDDIYVSPSQVRRFNLRTGDTIAGKIRPPKEGERYFALLKVNEVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D+P+ +RNKILFENLTPLHA ER+ MERGNGSTEDITAR+LDL +PIGKGQRGLIVAPP
Sbjct: 121 FDKPEISRNKILFENLTPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKTMLLQNIAQSI+ N+PE VLMVLLIDERPEEVTEMQRLV GEV+ASTFDEPASRHV
Sbjct: 181 KAGKTMLLQNIAQSISYNNPEVVLMVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVP+SGKVLTGGVDANALHRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+E GGSLTIIATAL+DTGSKMDEVIYEEFKGTGN ELHL+RK AEKRVFPAIDF
Sbjct: 301 FGAARNIENGGSLTIIATALIDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
           NRSGTRREE LT +DELQKMWILRKI++PM E  AMEFLIDKLAMTKTNDEFF AM+R
Sbjct: 361 NRSGTRREEKLTTSDELQKMWILRKILNPMDEVAAMEFLIDKLAMTKTNDEFFTAMKR 418