Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 418 a.a., transcription termination factor Rho (NCBI) from Rhodospirillum rubrum S1H

 Score =  585 bits (1509), Expect = e-172
 Identities = 288/416 (69%), Positives = 356/416 (85%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L ELK+   +DL+   E L +EN + LRKQD++FAILK  A++   IFG+GVLEILQD
Sbjct: 1   MHLQELKSKSPADLLAFAEELEIENASNLRKQDMMFAILKQLAENDTAIFGEGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLR+ +S+YL GPDDIYVSPSQ+RRF LRTGD++ G+IR PK+GERYFALLKVN +N
Sbjct: 61  GFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQIRAPKDGERYFALLKVNKIN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P++ R++I F+NLTPL+ +ER+ +E  + + ++ T R++DL  P+GKGQR LIVAPP
Sbjct: 121 FEAPESVRHRINFDNLTPLYPDERLKLEIDDPTRKEFTTRIIDLITPLGKGQRALIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           + GKT++LQN+A +I++N+PE  L+VLLIDERPEEVT+M R V GEVV+STFDEPASRHV
Sbjct: 181 RTGKTVMLQNVAHAISANNPEVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHK+DVVILLDSITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RK+A++RVFP+ID 
Sbjct: 301 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKLADRRVFPSIDI 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
            RSGTR+EELL + D L KMW+LR+I+ PMG  DAMEFL+ K+  TK ND+FFDAM
Sbjct: 361 ARSGTRKEELLVRKDVLSKMWVLRRILSPMGVQDAMEFLLGKMKETKNNDDFFDAM 416