Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., ATPase FliI/YscN (NCBI) from Rhodospirillum rubrum S1H

 Score = 69.3 bits (168), Expect = 2e-16
 Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 24/247 (9%)

Query: 139 LHANERMVMERGN----------GSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLL 188
           L A ER V  RG           G   D+  R ++      +GQR  I A    GK+ ++
Sbjct: 119 LPAGERAVAIRGRPPSAHSRQRVGGKLDLGVRAINTFLTCCRGQRMGIFAGSGVGKSSVM 178

Query: 189 QNIAQSIASNHPECVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQ 241
               ++  ++    V+++ L+ ER  E  E        + L +   V +T DE      Q
Sbjct: 179 SMFIRNTNAD----VIVMGLVGERGREAREFIEDDLGEEGLKRAVTVVATSDESPLMRRQ 234

Query: 242 VAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGK--VLTGGVDANALHRPKR 299
            A M +  A+   +   DV+ L+DS+TR A A   +  ++G+     G         PK 
Sbjct: 235 AAYMTLAVAEYFRDQGLDVLCLMDSVTRFAMAQREISLSAGEPPASKGYTPTVFAELPKL 294

Query: 300 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
              A   VE  GS+T + T LV+ G   +E I +  +G  +  + L+R IAE+  +PAI+
Sbjct: 295 LERAGPGVEGSGSITGLFTVLVE-GDDHNEPISDAVRGILDGHIVLDRAIAERGRYPAIN 353

Query: 360 FNRSGTR 366
             RS +R
Sbjct: 354 ILRSVSR 360