Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., transcription termination factor Rho from Phaeobacter inhibens DSM 17395

 Score =  567 bits (1462), Expect = e-166
 Identities = 281/416 (67%), Positives = 348/416 (83%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           +NL++LK     DL+ + E L +EN + +RK +++F IL+  A  G +I GDGVLE+LQD
Sbjct: 6   LNLSDLKAKSPKDLLSMAEELEIENASTMRKGEMMFQILRERADEGWEIAGDGVLEVLQD 65

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS +++YL GPDDIYVSP  IR++ LRTGD++ G+I+ P E ERYFAL  V  +N
Sbjct: 66  GFGFLRSPEANYLPGPDDIYVSPDMIRQYALRTGDTVDGQIKSPLENERYFALTNVTKIN 125

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P+ AR+KI F+NLTPL+ +ER+ ME  + + +D +ARV+DL +PIGKGQR LIVAPP
Sbjct: 126 FEEPEKARHKIAFDNLTPLYPDERLKMEIEDPTIKDRSARVIDLVSPIGKGQRSLIVAPP 185

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           + GKT++LQNIA SIA NHPEC L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA+RHV
Sbjct: 186 RTGKTVILQNIAHSIAKNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 245

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
            V+EMVIEKAKRLVEHK+DVVILLDSITRL RA+NTVVP+SGKVLTGGVDANAL RPKRF
Sbjct: 246 AVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRF 305

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L+RKIA+KRVFPAID 
Sbjct: 306 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVFPAIDI 365

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
            +SGTR+E+LL    +L K ++LR+I++PMG TDA+EFL+ KL  TKTN EFFD+M
Sbjct: 366 LKSGTRKEDLLVDKGDLAKTFVLRRILNPMGTTDAIEFLLSKLKQTKTNSEFFDSM 421