Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 580 a.a., transcription termination factor Rho from Pedobacter sp. GW460-11-11-14-LB5

 Score =  466 bits (1199), Expect = e-136
 Identities = 232/368 (63%), Positives = 289/368 (78%), Gaps = 3/368 (0%)

Query: 49  IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGE 108
           I  +GVLEI+ DG+GFLRSAD +YL  PDDIYVS SQI+ F L+TGD++ G IRPPKEGE
Sbjct: 214 ITNEGVLEIMPDGYGFLRSADYNYLTSPDDIYVSQSQIKLFGLKTGDTVKGSIRPPKEGE 273

Query: 109 RYFALLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPI 168
           +YF L++V T+N   P   R+++ F+ LTPL   ER+ +      T + + R++DL  PI
Sbjct: 274 KYFPLVRVETINGRIPAEVRDRVPFDYLTPLFPTERLNLFT---DTNNYSTRIMDLFTPI 330

Query: 169 GKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVV 228
           GKGQRGLIVA PK GKT LL+ +A +IA NHPE  L++LLIDERPEEVT+M R V+ EV+
Sbjct: 331 GKGQRGLIVAQPKTGKTNLLKEVANAIAKNHPEVYLIILLIDERPEEVTDMARSVRAEVI 390

Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGG 288
           ASTFDEPA RHV++A +V+EK+KRLVE   DVVILLDSITRLARAYNT  PASGK+L+GG
Sbjct: 391 ASTFDEPAERHVKIANIVLEKSKRLVESGHDVVILLDSITRLARAYNTTAPASGKILSGG 450

Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRK 348
           VDANALH+PKRFFGAARN+E GGSLTI+ATAL DTGSKMDEVI+EEFKGTGNMEL L+RK
Sbjct: 451 VDANALHKPKRFFGAARNIENGGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRK 510

Query: 349 IAEKRVFPAIDFNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKT 408
           ++ KR+FPAID   S TRR++LL   D LQ++WILR  +  M   +AMEF+  ++  TK+
Sbjct: 511 LSNKRIFPAIDITASSTRRDDLLHDRDTLQRVWILRNHLADMNSQEAMEFVQSQIKGTKS 570

Query: 409 NDEFFDAM 416
           N+EF  +M
Sbjct: 571 NEEFLISM 578



 Score = 30.4 bits (67), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 4  TELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAH-----AKSGEDIFGD 52
          TEL +   ++L +L +S G+E    LRK D++  +L        AK+G D + D
Sbjct: 5  TELNDKLTTELRELAKSYGIEGADSLRKIDLVEVLLHQQEIINAAKAGADPYSD 58