Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., transcription termination factor Rho (RefSeq) from Shewanella loihica PV-4

 Score =  712 bits (1839), Expect = 0.0
 Identities = 362/418 (86%), Positives = 388/418 (92%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNL+ELK   +SDLV L + + +EN+AR RKQDIIFAILKAHAKSGEDIFG GVLEILQD
Sbjct: 1   MNLSELKEKSISDLVILAQDMKIENMARARKQDIIFAILKAHAKSGEDIFGGGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSAD SYLAGPDDIYVSPSQIRRFN+RTGD+I GKIRPPKEGERYFALLKV+ VN
Sbjct: 61  GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVSEVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D+P+N+R+KILFENLTPLHA ER+ MERGNGSTEDITAR+LDL +PIGKGQRGLIVAPP
Sbjct: 121 FDKPENSRSKILFENLTPLHAEERIRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT+LLQNIAQSI  N+PE VLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
Sbjct: 181 KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDANALHRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+E GGSLTIIATALVDTGSKMDEVIYEEFKGTGN ELHL+RK AEKRVFPAIDF
Sbjct: 301 FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
           NRSGTRREE LT  DELQKMWILRKI++PM E   MEFLIDKLAMTKTN+EFF AM+R
Sbjct: 361 NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSGMEFLIDKLAMTKTNEEFFTAMKR 418