Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 420 a.a., transcription termination factor Rho from Dechlorosoma suillum PS

 Score =  606 bits (1562), Expect = e-178
 Identities = 301/417 (72%), Positives = 363/417 (87%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L+ELKN  VS L+++  +  +E   RLRKQ++IFA+LK HAK GE IFGDGVLE+L D
Sbjct: 1   MHLSELKNLHVSQLLEMATTNEIEGANRLRKQELIFALLKKHAKKGESIFGDGVLEVLPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS ++SYLA  DDIYVSPSQIRRFNL TGD+I G+IR PK+GERYFAL+KV+ +N
Sbjct: 61  GFGFLRSPETSYLASTDDIYVSPSQIRRFNLHTGDTIEGEIRTPKDGERYFALVKVDKIN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P+  ++KILFENLTPLH +  + +ER   + E+ T+RV+D+ APIGKGQRGL+VAPP
Sbjct: 121 YESPEACKSKILFENLTPLHPSSHLHLERPIRAEENTTSRVIDMIAPIGKGQRGLLVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           K+GKT++LQ+IA +I +NHP+  L+VLLIDERPEEVTEMQR V+GEVVASTFDEPA+RHV
Sbjct: 181 KSGKTVMLQHIAHAITANHPDVQLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPATRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
            VAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV PASGKVLTGGVDANAL +PKRF
Sbjct: 241 IVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSLTIIATALV+TGS+MD+VIYEEFKGTGNME+HL+R++AEKR++PAI+ 
Sbjct: 301 FGAARNIEEGGSLTIIATALVETGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRIYPAINV 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMR 417
           NRSGTRREELL K D LQKMW+LRK+++ M + +AMEFL+DK+  TK N EFFDAMR
Sbjct: 361 NRSGTRREELLLKPDVLQKMWVLRKLLYNMDDLEAMEFLLDKVKATKANAEFFDAMR 417