Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 602 a.a., Probable transcription termination factor Rho homolog from Mycobacterium tuberculosis H37Rv

 Score =  402 bits (1034), Expect = e-116
 Identities = 215/406 (52%), Positives = 287/406 (70%), Gaps = 25/406 (6%)

Query: 13  DLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQDGFGFLRSADSSY 72
           D  + GE  G    A LR+ D++  +              G+L++L D + F+R+  S Y
Sbjct: 201 DRRRRGERSGDGAEAELREDDVVQPVA-------------GILDVL-DNYAFVRT--SGY 244

Query: 73  LAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGE------RYFALLKVNTVNDDRPDN 126
           L GP D+YVS + +R+  +R GD++ G +R PKEGE      ++  L++++++N    ++
Sbjct: 245 LPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSINGGSVED 304

Query: 127 ARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTM 186
           A+ +  F  LTPL+ N+R+ +E    STE +T RV+DL  PIGKGQR LIV+PPKAGKT 
Sbjct: 305 AKKRPEFGKLTPLYPNQRLRLET---STERLTTRVIDLIMPIGKGQRALIVSPPKAGKTT 361

Query: 187 LLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMV 246
           +LQ+IA +I  N+PEC LMV+L+DERPEEVT+MQR VKGEV+ASTFD P S H  VAE+ 
Sbjct: 362 ILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELA 421

Query: 247 IEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARN 306
           IE+AKRLVE  KDVV+LLDSITRL RAYN   PASG++L+GGVD+ AL+ PKRF GAARN
Sbjct: 422 IERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARN 481

Query: 307 VEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
           +EEGGSLTIIATA+V+TGS  D VI+EEFKGTGN EL L+RKIAE+RVFPA+D N SGTR
Sbjct: 482 IEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTR 541

Query: 367 REELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEF 412
           ++ELL   DE   +  LR+++  +    A++ L+ +L  TK N EF
Sbjct: 542 KDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEF 587