Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., transcription termination factor Rho (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  555 bits (1431), Expect = e-163
 Identities = 275/419 (65%), Positives = 346/419 (82%), Gaps = 4/419 (0%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNL+ELK   +S+L++L E   +E  + +RKQ++IFA+L+A A     I+GDGVLEIL D
Sbjct: 1   MNLSELKIKSMSELMELAEQYNVEGASGMRKQELIFALLQACASQNGAIYGDGVLEILPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS   SY+ GPDDIYVSPSQIRRFNLR GD ++G+IRPPKEGERYFALLKV  + 
Sbjct: 61  GFGFLRSPLCSYMPGPDDIYVSPSQIRRFNLRKGDVVSGQIRPPKEGERYFALLKVTEIG 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P+NA+N +LF+NLTP++ + + +ME G+   ++ ++RV+D+ AP+G+GQRGLIVAPP
Sbjct: 121 FEPPENAKNLVLFDNLTPIYPDRQFIMENGD---KNYSSRVIDMMAPVGRGQRGLIVAPP 177

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRH 239
           + GKT+LLQ IA SI +NHP+  L+VLLIDERPEEVT+M+R VK  EVV+STFDEP  RH
Sbjct: 178 RTGKTILLQTIANSINANHPDAYLIVLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRH 237

Query: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299
           VQV EMV+EKAKRLVE K+DVVILLDSITRL RAYN V P+SG+VL+GG+DANAL RPKR
Sbjct: 238 VQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKR 297

Query: 300 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
           FFGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGNME++L R +AEKRVFPAID
Sbjct: 298 FFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLERHLAEKRVFPAID 357

Query: 360 FNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
            NR+GTR+E+LL   + L ++WILRKI+ PM   D+MEFL+DK+  TK+N EF + M +
Sbjct: 358 INRTGTRKEDLLLSDEVLNRVWILRKILAPMSPIDSMEFLLDKMRATKSNREFLNVMNK 416