Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., transcription termination factor rho from Marinobacter adhaerens HP15

 Score =  664 bits (1714), Expect = 0.0
 Identities = 329/420 (78%), Positives = 383/420 (91%), Gaps = 1/420 (0%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNLTELK   V +L+ + + +GL+NLAR RKQD+IF ILK HAKSGEDI+GDGVLEILQD
Sbjct: 61  MNLTELKQKSVPELLDIAQEMGLDNLARSRKQDVIFTILKKHAKSGEDIYGDGVLEILQD 120

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSAD+SYLAGPDDIYVSPSQIRRFNLRTGD++AGKIRPPK+GERYFALLKV+ +N
Sbjct: 121 GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLKVSEIN 180

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D+PDNARNKILFENLTPL  +ER+++E GNGSTED+++RVLDL APIGKGQRGLIV+PP
Sbjct: 181 FDKPDNARNKILFENLTPLFPDERLMLEAGNGSTEDLSSRVLDLVAPIGKGQRGLIVSPP 240

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT+L+Q+IAQSI  N+PEC +MVLLIDERPEEVTEMQR V+GEV+ASTFDEP +RHV
Sbjct: 241 KAGKTLLMQSIAQSITRNNPECHVMVLLIDERPEEVTEMQRTVRGEVIASTFDEPPARHV 300

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDA+AL +PKRF
Sbjct: 301 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF 360

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARNVEEGGSLTI+ATALV+TGSKMDEVIYEEFKGTGNME+HL+RKIAEKR +PAI+ 
Sbjct: 361 FGAARNVEEGGSLTILATALVNTGSKMDEVIYEEFKGTGNMEIHLDRKIAEKRTYPAINI 420

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPM-GETDAMEFLIDKLAMTKTNDEFFDAMRRQ 419
             SGTRRE+LL    ++Q++WILRK++H M  +T A+EFL+DKL  TKTNDEFF +M+R+
Sbjct: 421 RSSGTRREDLLMSEADIQRVWILRKLLHSMDDDTAAIEFLLDKLKDTKTNDEFFQSMKRR 480