Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., transcription termination factor Rho (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  731 bits (1886), Expect = 0.0
 Identities = 370/418 (88%), Positives = 393/418 (94%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNLTELK+TP+SDLV L E++ LEN+AR RKQDIIF+ILKAHAKSGEDIFG GVLEILQD
Sbjct: 1   MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRSAD SYLAGPDDIYVSPSQIRRFN+RTGD+I GKIRPPKEGERYFALLKVN VN
Sbjct: 61  GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            D+P+N+RNKILFENLTPLHA ERM MERGNGSTEDITAR+LDL +PIGKGQRGLIVAPP
Sbjct: 121 FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           KAGKT+LLQNIAQSI  N+PE VLMVLLIDERPEEVTEMQRLVKGEV+ASTFDEPASRHV
Sbjct: 181 KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTV+P+SGKVLTGGVDANALHRPKRF
Sbjct: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+E GGSLTIIATALVDTGSKMDEVIYEEFKGTGN ELHL+RK AEKRVFPAIDF
Sbjct: 301 FGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
           NRSGTRREE LT  DELQKMWILRKI++PM E  AMEFLIDKLAMTKTNDEFF AM+R
Sbjct: 361 NRSGTRREEKLTNPDELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNDEFFTAMKR 418