Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., transcription termination factor Rho (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  546 bits (1407), Expect = e-160
 Identities = 272/419 (64%), Positives = 344/419 (82%), Gaps = 4/419 (0%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           MNL+ELK   + +L++L E   +EN + +RKQ++IFA+L+A A     I+GDGVLEIL D
Sbjct: 1   MNLSELKIKSMQELMELAEQFKVENASGMRKQELIFALLQACASQNGAIYGDGVLEILPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS   SY+ GPDDIYVSPSQIRRF LR GD ++G+IRPPKEGERYFALLKV  + 
Sbjct: 61  GFGFLRSPLCSYMPGPDDIYVSPSQIRRFALRKGDVVSGQIRPPKEGERYFALLKVTEIG 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
            + P+NA+N +LF+NLTP++ + + +ME G+   ++ ++R++D+ APIG GQRGLIVAPP
Sbjct: 121 FEPPENAKNLVLFDNLTPIYPDRQFIMENGD---KNYSSRIIDIMAPIGCGQRGLIVAPP 177

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRH 239
           + GKTMLLQ IA SI +N P+  L+VLLIDERPEEVT+M+R VK  EVV+STFDEP  RH
Sbjct: 178 RTGKTMLLQTIANSINANSPDTYLIVLLIDERPEEVTDMERTVKNAEVVSSTFDEPPQRH 237

Query: 240 VQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299
           VQV EMV+EKAKRLVE K+DVVILLDSITRL RAYN V P+SG+VL+GG+DANAL RPKR
Sbjct: 238 VQVCEMVLEKAKRLVERKRDVVILLDSITRLGRAYNAVTPSSGRVLSGGLDANALQRPKR 297

Query: 300 FFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAID 359
           FFGAARN+EEGGSLTIIATAL+DTGS+MDEVI+EEFKGTGNME++L+R ++EKRVFPAID
Sbjct: 298 FFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMEIYLDRHLSEKRVFPAID 357

Query: 360 FNRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
            NR+GTR+E+LL   + L ++WILRKI+ PM   D+MEFL+DK+  TK+N +F + M +
Sbjct: 358 INRTGTRKEDLLLSDEVLNRVWILRKILAPMSSIDSMEFLLDKMRGTKSNRDFMNCMNK 416