Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., transcription termination factor Rho from Paraburkholderia graminis OAS925

 Score =  599 bits (1545), Expect = e-176
 Identities = 292/418 (69%), Positives = 359/418 (85%)

Query: 1   MNLTELKNTPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKSGEDIFGDGVLEILQD 60
           M+L+ELK   VS+L+++   L +E+  RLRKQ+++FAILK  AK+G+ IFGDG LE+L D
Sbjct: 1   MHLSELKTLHVSELIEMANGLEIESANRLRKQELMFAILKKRAKTGDTIFGDGTLEVLPD 60

Query: 61  GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVN 120
           GFGFLRS ++SYLA  DDIY+SPSQIRRFNL TGD+I G++R PK+GERYFAL+KV+ VN
Sbjct: 61  GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN 120

Query: 121 DDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPP 180
              P+ +++KI+FENLTPLH N+ +++ER     E++T R++D+ APIGKGQRGL+VA P
Sbjct: 121 GQPPEASKHKIMFENLTPLHPNKVLLLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP 180

Query: 181 KAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240
           K+GKT++LQ+IA +I  NHP+ VL VLLIDERPEEVTEMQR V GEV+ASTFDEPA+RHV
Sbjct: 181 KSGKTVMLQHIAHAIKQNHPDVVLFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV 240

Query: 241 QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300
           QVAEMVIEKAKRLVE K DVVILLDSITRLARAYNTVVPASGKVLTGGVDANAL RPKRF
Sbjct: 241 QVAEMVIEKAKRLVEMKNDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF 300

Query: 301 FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF 360
           FGAARN+EEGGSLTII TAL++TGS+MD+VIYEEFKGTGNME+HL R++AEKRV+P+I+ 
Sbjct: 301 FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL 360

Query: 361 NRSGTRREELLTKTDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAMRR 418
           N+SGTRREELL K + LQK+W+LRK +H M E ++MEFL+DK+  TK+N EFFD MRR
Sbjct: 361 NKSGTRREELLIKPEVLQKIWVLRKFIHDMDEVESMEFLLDKIRQTKSNSEFFDMMRR 418