Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., transcription termination factor rho (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  468 bits (1203), Expect = e-136
 Identities = 241/394 (61%), Positives = 307/394 (77%), Gaps = 2/394 (0%)

Query: 24  ENLARLRKQDIIFAILKAHAKSGEDIF-GDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82
           ENL  +++Q     I +      +DI  G GVLEI+QDG+GFLRS+D +YL+ PDDIYVS
Sbjct: 328 ENLPAVQQQPERKVIEREKPYEFDDILSGVGVLEIMQDGYGFLRSSDYNYLSSPDDIYVS 387

Query: 83  PSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVNTVNDDRPDNARNKILFENLTPLHAN 142
            SQI+ F L+TGD + G IRPPKEGE+YF L+KV+ +N       R+++ FE+LTPL  +
Sbjct: 388 QSQIKLFGLKTGDVVEGIIRPPKEGEKYFPLVKVSKINGRDAAFVRDRVPFEHLTPLFPD 447

Query: 143 ERMVMERGNGSTEDITARVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPEC 202
           E+  + +G G ++ ++ARV+DL APIGKGQR LIVA PK GKT+L+++IA +IA+NHPE 
Sbjct: 448 EKFRLCKG-GYSDSMSARVVDLFAPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEV 506

Query: 203 VLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVI 262
            +++LLIDERPEEVT+M R V  EV+ASTFDEPA RHV++A +V+EKAKRLVE   DVVI
Sbjct: 507 YMIMLLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAKRLVECGHDVVI 566

Query: 263 LLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVD 322
            LDSITRLARAYNTV PASGKVL+GGVDANALH+PKRFFGAARN+E GGSLTIIATAL+D
Sbjct: 567 FLDSITRLARAYNTVSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALID 626

Query: 323 TGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKTDELQKMWI 382
           TGSKMDEVI+EEFKGTGNMEL L+R ++ KR+FPA++   S TRR++LL     L +MWI
Sbjct: 627 TGSKMDEVIFEEFKGTGNMELQLDRNLSNKRIFPAVNITASSTRRDDLLLDKTTLDRMWI 686

Query: 383 LRKIVHPMGETDAMEFLIDKLAMTKTNDEFFDAM 416
           LRK +  M   +AM+F+ D+L  T+ NDEF  +M
Sbjct: 687 LRKYLADMNPIEAMDFVKDRLEKTRDNDEFLMSM 720