Pairwise Alignments

Query, 419 a.a., transcription termination factor Rho from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., type III secretion system ATPase from Burkholderia phytofirmans PsJN

 Score = 68.9 bits (167), Expect = 3e-16
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 21/218 (9%)

Query: 160 RVLDLAAPIGKGQRGLIVAPPKAGKTMLLQNIAQSIASNHPECVLMVLLIDERPEEVTEM 219
           RV+D     G GQR  I A    GK+ L+  IA   + +     ++V LI ER  EV E 
Sbjct: 151 RVIDGLLSCGVGQRVGIFAAAGGGKSTLMGMIANGASVD----AIVVALIGERGREVGEF 206

Query: 220 ------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARA 273
                  R     V+AST + PA+  ++ AE+    A  L    K V++L DS+TR ARA
Sbjct: 207 IHDHLGARRASSIVIASTSERPAAERIKAAELACRVASDLRAEGKHVLLLFDSLTRYARA 266

Query: 274 YNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG-----GSLTIIATALVDTGSKMD 328
              V  A G+           + P+ F    R +E       G++T   T L +   +M 
Sbjct: 267 LREVGLAVGE-----PPVRRGYPPRVFAELPRLIETAGLTRQGAVTAFFTVLAE-DEEMS 320

Query: 329 EVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTR 366
           + + EE +   +  + L+ ++     +PAID  +S +R
Sbjct: 321 DPVAEEARSLLDGHIQLSGRLGGAGHYPAIDVLKSKSR 358