Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas fluorescens FW300-N2E2

 Score =  308 bits (789), Expect = 2e-88
 Identities = 166/382 (43%), Positives = 236/382 (61%), Gaps = 2/382 (0%)

Query: 10  KFADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFN 69
           +F DF L P+++  ++  GF YCTPIQA  L   L+G+D  G+AQTGTGKT AFL +   
Sbjct: 103 RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGYTLAGKDAIGRAQTGTGKTAAFLISIIT 162

Query: 70  HLLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLA 129
            LL TP  + R   +PRA+I+APTREL +QI  DA  L   TGL      GG  +DKQL 
Sbjct: 163 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLK 222

Query: 130 KLQSG-VDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPE 188
            L++   DIL+ T GR++DF ++   +L+ ++ +VLDEADRM D+GFI  +R + R+ P 
Sbjct: 223 HLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 282

Query: 189 PKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQ 248
             +R  +LFSAT +  V  LA +   +P  V +E E      +++ ++  +   K  LL 
Sbjct: 283 KSERQTLLFSATFTEDVMNLAKQWTTDPAIVEIEAENVASENVEQHIYAVAGADKYKLLY 342

Query: 249 TLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVD 308
            L+ +   +R ++FAN K    +I   L  D      L+GDVPQ KR + LE F +G + 
Sbjct: 343 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 402

Query: 309 ILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINL 368
           +LVATDVA RG+HI  ++HV N+ LP+  +DYVHRIGRTGRAGA+G SISFA E+ +  L
Sbjct: 403 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 462

Query: 369 PAIESYIEHAIPTSDYDPSALL 390
           P+IE+ +   I + +  P+ LL
Sbjct: 463 PSIEALLGRKI-SCEMPPTHLL 483