Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  261 bits (667), Expect = 3e-74
 Identities = 153/414 (36%), Positives = 229/414 (55%), Gaps = 8/414 (1%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  LE  G+   TP+QA A+P +L+G+D+   AQTGTGKT  F       
Sbjct: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLLQ- 61

Query: 71  LLTTPAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQLAK 130
           LLTT   +  A +  RA+I+ PTRELA Q+         +  L     YGG S + Q+ K
Sbjct: 62  LLTTEGPKVAANSV-RALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 131 LQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMPEPK 190
           L+ GVD+L+ T GR++D ++Q     N +Q +VLDEADRM DLGF +++  +++ +P  K
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALP--K 178

Query: 191 DRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALLQTL 250
            R  +LFSAT S  ++ LA + +N+P  + V P     + +++ +     + K  L   L
Sbjct: 179 KRQTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHL 238

Query: 251 IEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDVDIL 310
           + +    + ++FA T++  + +   L         + GD PQ  R+R L++F  G+V IL
Sbjct: 239 MRKHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQIL 298

Query: 311 VATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAINLPA 370
           VATDVAARGL I  +  V N+DLP   EDY+HRIGRTGRAGA+G +IS  C +    L A
Sbjct: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSA 358

Query: 371 IESYIEHAIP---TSDYDPSALLTDLPAPLSLRSSPQQ-RRTNTAGSRNSNNGG 420
           IE      +P     D++P   + D  A   +   P++ ++  T+G     N G
Sbjct: 359 IEMLTRQTLPRQMEQDFEPEHRVPDTDASGQVIKKPKKPKKPKTSGGGGKRNLG 412