Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  261 bits (667), Expect = 4e-74
 Identities = 154/425 (36%), Positives = 224/425 (52%), Gaps = 17/425 (4%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 71  LLTT---PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L        ++     QPR +++ PTRELA Q+    +         +A  +GG   + Q
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  GVD+L+   GR++D   Q   +L+H++ +VLDEADRM D+GF+ D++ +  R+P
Sbjct: 123 VQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  + +LA + ++NPE + V P   T  RI++ +F     HK ALL
Sbjct: 183 AK--RQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI     ++ ++F  TKH   ++  +L         + G+  Q  R + L  F  G+V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            ILVATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLPAPLSLRSSPQQRRTNTA------GSRNSNN 418
           L +IE   +  I   D   +D S +  + P    +R  P  R    A      G   S  
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKP---EVRERPDVRNPRNARGPRGDGPNGSGG 417

Query: 419 GGNRK 423
           GG RK
Sbjct: 418 GGGRK 422