Pairwise Alignments

Query, 438 a.a., ATP-dependent RNA helicase RhlB from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  261 bits (667), Expect = 4e-74
 Identities = 156/443 (35%), Positives = 234/443 (52%), Gaps = 17/443 (3%)

Query: 11  FADFGLQPQVIDGLEKKGFVYCTPIQALALPVLLSGQDIAGQAQTGTGKTLAFLTATFNH 70
           FA  GL   ++  +E  G+   TP+Q  A+P +L G+D+   AQTGTGKT  F       
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 71  LLTT---PAAEGRAETQPRAIIMAPTRELAIQIFNDAEPLLASTGLKAALAYGGESYDKQ 127
           L        ++     QPR +++ PTRELA Q+    +         +A  +GG   + Q
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMNPQ 122

Query: 128 LAKLQSGVDILIGTTGRIIDFYKQRVFNLNHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
           +  +  GVD+L+   GR++D   Q   +L+H++ +VLDEADRM D+GF+ D++ +  R+P
Sbjct: 123 VQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLP 182

Query: 188 EPKDRLNMLFSATLSYRVQELAFEHMNNPEHVVVEPEQKTGHRIQEELFYPSNEHKMALL 247
               R N+LFSAT S  + +LA + ++NPE + V P   T  RI++ +F  +  HK +LL
Sbjct: 183 AK--RQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL 240

Query: 248 QTLIEEEWPDRAIIFANTKHRCEQIWAHLAADNHRVGLLTGDVPQKKRERILEQFTQGDV 307
             LI     ++ ++F  TKH   ++  +L         + G+  Q  R + L  F  G+V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300

Query: 308 DILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYAIN 367
            ILVATD+AARGL I Q+ HV N++LP+  EDYVHRIGRTGRAG SG +IS    +    
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 368 LPAIESYIEHAIPTSD---YDPSALLTDLPAPL---SLRSSPQQRRTNTAGSRNSNNGGN 421
           L +IE   +  I   D   +D SA+  + P       +R+    R     G   S  GG 
Sbjct: 361 LKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGGG 420

Query: 422 RKPQ------QRRPRAPRPKKEA 438
           RK +      + +P A R ++ A
Sbjct: 421 RKDKGKDKGGKEKPAAGRGERPA 443